LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01206	ATGCGACCACCGCGGAAGAAGGTGAATTTCCGCCACGGCGACAAGGTGGAGGTGTGCAGCAACGAGGAGGGCTTCATCGGCTCTTACTACCTCGCCACCGTCGTTTCGCGCCTCGACAACGGCCTCTACGTCGTACGCTACGACACGCTGCTGGAGGAAGACGGGTCCCAGCCCCTCACCGAGACCCTCTTCCCCAATGAGCTCCGCCCCAAGCCTCCGCCCCTCGCCGCCGCCACCTCCTTCGCCCGCTGCCAGCGCGTCGACGCCTTTGACAACGACGGCTGGTGGGTCGGCCAGGTCTCCGGCAAGGTCGACGATCACCACTACTACGTTTATTTCTCCACCACTCATGAGGAGATCGCGTACCCCTCCTCCGCAATTAGGGTTCACCAGGAGTGGCTAAACGGCCAATGGATTCGCTCCGATTCATGA	432	0.6227	MRPPRKKVNFRHGDKVEVCSNEEGFIGSYYLATVVSRLDNGLYVVRYDTLLEEDGSQPLTETLFPNELRPKPPPLAAATSFARCQRVDAFDNDGWWVGQVSGKVDDHHYYVYFSTTHEEIAYPSSAIRVHQEWLNGQWIRSDS	143

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01206	143	CDD	Tudor_Agenet_AtDUF_rpt1_3	10	73	-	-
	Viun11g01206	143	PANTHER	AGENET DOMAIN-CONTAINING PROTEIN-RELATED	8	140	-	-
	Viun11g01206	143	SMART	agenet_At_2	8	76	IPR014002	-
	Viun11g01206	143	SMART	agenet_At_2	79	135	IPR014002	-
	Viun11g01206	143	Pfam	Agenet domain	13	73	IPR008395	-
	Viun11g01206	143	Gene3D	-	1	88	-	-
	Viun11g01206	143	CDD	Tudor_Agenet_AtDUF_rpt2_4	85	129	-	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01206	Viun-Chr11	26817504	26818200	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01206	20	133	PHD Transcription Factor Family	AT5G58610	32.609	1.64e-12	62.0

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01206	-		-	vra:106753183	271.552

Showing 1 to 1 of 1 entries