Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01206 ATGCGACCACCGCGGAAGAAGGTGAATTTCCGCCACGGCGACAAGGTGGAGGTGTGCAGCAACGAGGAGGGCTTCATCGGCTCTTACTACCTCGCCACCGTCGTTTCGCGCCTCGACAACGGCCTCTACGTCGTACGCTACGACACGCTGCTGGAGGAAGACGGGTCCCAGCCCCTCACCGAGACCCTCTTCCCCAATGAGCTCCGCCCCAAGCCTCCGCCCCTCGCCGCCGCCACCTCCTTCGCCCGCTGCCAGCGCGTCGACGCCTTTGACAACGACGGCTGGTGGGTCGGCCAGGTCTCCGGCAAGGTCGACGATCACCACTACTACGTTTATTTCTCCACCACTCATGAGGAGATCGCGTACCCCTCCTCCGCAATTAGGGTTCACCAGGAGTGGCTAAACGGCCAATGGATTCGCTCCGATTCATGA 432 0.6227 MRPPRKKVNFRHGDKVEVCSNEEGFIGSYYLATVVSRLDNGLYVVRYDTLLEEDGSQPLTETLFPNELRPKPPPLAAATSFARCQRVDAFDNDGWWVGQVSGKVDDHHYYVYFSTTHEEIAYPSSAIRVHQEWLNGQWIRSDS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01206 143 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Viun11g01206 143 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 140 - -
Viun11g01206 143 SMART agenet_At_2 8 76 IPR014002 -
Viun11g01206 143 SMART agenet_At_2 79 135 IPR014002 -
Viun11g01206 143 Pfam Agenet domain 13 73 IPR008395 -
Viun11g01206 143 Gene3D - 1 88 - -
Viun11g01206 143 CDD Tudor_Agenet_AtDUF_rpt2_4 85 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01206 Viun-Chr11 26817504 26818200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01206 20 133 PHD Transcription Factor Family AT5G58610 32.609 1.64e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01206 - - vra:106753183 271.552