Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01197 ATGGAAGAGGGACGAGAAGATGCAGCTCCAGCAGAGCAAAGGCCATCTAACATGTCATGGTGGCCTTCAGATTTTGTTGAAAATTTTGCATCCGTTTCTTTGAGCTCTCAAGATGAAACCTTAAATAATAAAGAATTAGCAGGACATGCTAACCAAGATGTTATGTCCCCTCAAAAGGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCTGAACCAATACCCAATGGTTTTTATTCAGTTATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTAGATGAGCTTCAAGCTTTGGGTGGAGAGGCTTTTAGGGCTGATGTCATTGTTGTGGATTCAGAGAGAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTGGTTAAAGGATTGAATTCAAATCCACCAGCAATGATTAAGAAGATAGCTGGATTAGTTTCTGACTTTTATAAGCGACCAAACGTAGAAAGTCTAGCTAAAGCTGCACTTGAGGAATCCTCCCACATGTTTGAGAATCATGGTGTCCAGATGCTGGGGCAAATAAGACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTATGATGGGTTTTCCCAATGATGGGGCTGCTGATTGTGTTGACTCGTACAAGCATATGTCAGTTATTGTTGTGTTAAATTCTGTGGAATTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACAAAATCAATTCTTATGACACACATTTCTGCAGCTGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTAGAACCAAATAGTCCTTTATATGGAGTTTCAGATAGCAGTGTTGAAAAGGAGGAAAATCTTCAATTCCACAGAAGATTTGAAGTATCTTCAAATGTATCTGGCCTTCCCTTGCGAAACAGGATGTTACGATCATATACCAGTCTAGAAAGAAATTTGAGTGAACCCAACATTGGAACTGCGTTTGGTCGGCGGAGTCGGAGAAAGGTCATTGCTGATCAGAGGACTGCTAGTTCAAGTCCAGAACATCCATCATTGCGTGCACATGGACTGTCTAAGCTTAGTGGTGACAGAACTGCTTTTAGAGATTTTGCTGATGACCAGTCTACACCAAGATCCAGCTATAAGTCAGATGGTGCTTCCTCATCAGAAGCTCGTCGAATACGAAGAAGAAGTATCAGCATGACGCCAGAGATTGGTGATGATATTGCAAGGGCTGTACGGGCAATGAATGAATCATTAAAGCAAAAACGTCTTCTGAGAGAGAAAGAGACCGGTGATAGTTCATTGTCTCATTCACCAAATGATAGAGCCGGCAGTATGGATCTTCTGAAACAAAAGTCAAATTTCAATATTGATGGTCATCAAGAGAGGTCCCCCTTGTATTCGCTACACCATGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCATCCCCGCACGATTATAGAGGACAAGCTTCTGAGAGAAGCGGAGTGTCAGAATATCCAATGAATGACGAACTGGAGTCTACTTGGAATAAAGTCCTTCAATCGCCAATGTTCAATGATAGAACTCTGTTGCCATATGAAGAATGGAACATCGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGGATTGGGTTCTTCGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAACGTTATCTTATTTCTTGGTGCATGCACAAAGCCCCCACGGTTGTCAATGGTGACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGCAGAAGACTAAAGATGTTGCGGGACATATGCCGGGGCCTAATCCACATACATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCAAATTGTCTTGTGGACAAGCATTGGACCGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAACAGAGTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCGGAATGGATGGCTCCTGAACTTATTCGAAATGAACCATTCACCGAAAAATGTGATATATTTAGCTTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCTCCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCCGAAGGCCCGCTAGGCAGGCTGATTTCAGAGTGTTGGGCGGAACCACATGAACGGCCAAGTTGCGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTACTCTCTGTTTTGA 2442 0.4296 MEEGREDAAPAEQRPSNMSWWPSDFVENFASVSLSSQDETLNNKELAGHANQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQALGGEAFRADVIVVDSERDRRLSMLKQLIVALVKGLNSNPPAMIKKIAGLVSDFYKRPNVESLAKAALEESSHMFENHGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMMGFPNDGAADCVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSDSSVEKEENLQFHRRFEVSSNVSGLPLRNRMLRSYTSLERNLSEPNIGTAFGRRSRRKVIADQRTASSSPEHPSLRAHGLSKLSGDRTAFRDFADDQSTPRSSYKSDGASSSEARRIRRRSISMTPEIGDDIARAVRAMNESLKQKRLLREKETGDSSLSHSPNDRAGSMDLLKQKSNFNIDGHQERSPLYSLHHDPVTSQKAMSLPSSPHDYRGQASERSGVSEYPMNDELESTWNKVLQSPMFNDRTLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLIHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITESPMRDSLSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01197 813 Gene3D Transferase(Phosphotransferase) domain 1 636 812 - -
Viun11g01197 813 MobiDBLite consensus disorder prediction 492 515 - -
Viun11g01197 813 Gene3D Phosphorylase Kinase; domain 1 550 635 - -
Viun11g01197 813 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 309 805 - -
Viun11g01197 813 CDD STKc_MAP3K-like 563 805 - -
Viun11g01197 813 MobiDBLite consensus disorder prediction 438 464 - -
Viun11g01197 813 ProSitePatterns Protein kinases ATP-binding region signature. 563 584 IPR017441 GO:0005524
Viun11g01197 813 MobiDBLite consensus disorder prediction 389 404 - -
Viun11g01197 813 ProSiteProfiles Protein kinase domain profile. 557 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01197 813 MobiDBLite consensus disorder prediction 492 509 - -
Viun11g01197 813 SUPERFAMILY Protein kinase-like (PK-like) 531 805 IPR011009 -
Viun11g01197 813 MobiDBLite consensus disorder prediction 339 416 - -
Viun11g01197 813 FunFam Serine/threonine-protein kinase isoform 1 547 635 - -
Viun11g01197 813 MobiDBLite consensus disorder prediction 272 296 - -
Viun11g01197 813 MobiDBLite consensus disorder prediction 438 453 - -
Viun11g01197 813 SMART serkin_6 557 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01197 813 Pfam Protein tyrosine and serine/threonine kinase 558 805 IPR001245 GO:0004672|GO:0006468
Viun11g01197 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Viun11g01197 813 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Viun11g01197 813 MobiDBLite consensus disorder prediction 272 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01197 Viun-Chr11 26357274 26368537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01197 1 812 MAP Kinase Kinase Kinase AT3G58640 67.722 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Viun11g01197 PK_Tyr_Ser-Thr 8.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01197 - - gmx:100807193 1471.06