Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01184 ATGTTCGTTTCCAATACCCTCGATGAAAAAAATAATGCTGGGACAAACAAAGCAGCCGCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGAGGATACAGAGAATCTAGCTCATGAGAAAGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGAGAAGAAACTTACTCAGGCTCAGCTTGCTCAACTGATCAACGAGAAACCTCAAGTGATCCAGGAATACGAATCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAACTAAACTGCGTGGCAAGAAATAA 318 0.434 MFVSNTLDEKNNAGTNKAAASSTSLNTKRLDEDTENLAHEKVPTELKKAIMQARMEKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01184 105 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 105 - -
Viun11g01184 105 Pfam Helix-turn-helix 50 101 IPR001387 -
Viun11g01184 105 ProSiteProfiles Cro/C1-type HTH domain profile. 50 104 IPR001387 -
Viun11g01184 105 MobiDBLite consensus disorder prediction 1 27 - -
Viun11g01184 105 FunFam Multiprotein bridging factor 1 34 105 - -
Viun11g01184 105 CDD HTH_XRE 48 101 IPR001387 -
Viun11g01184 105 Gene3D - 34 105 IPR010982 GO:0003677
Viun11g01184 105 SMART mbf_short4 49 104 IPR001387 -
Viun11g01184 105 Pfam Multiprotein bridging factor 1 8 42 IPR013729 -
Viun11g01184 105 SUPERFAMILY lambda repressor-like DNA-binding domains 44 101 IPR010982 GO:0003677
Viun11g01184 105 Coils Coil 50 70 - -
Viun11g01184 105 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01184 Viun-Chr11 26137142 26139658 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Viun11g01184 HTH_3 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01184 K03627 - gmx:100500420 178.333