Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01138 ATGAATATAGAACAAATGAATTTCCCAAGTTCACACACGAAGCTATTTTGCACCCCAAATAAAGAAAAGTATTTTGCATGGTCCATTGAAGAAGAAGGTGAAATCATGAGCCACCATAGACACAACTTCACACCTCTGTCACGACAAAGAGGTTTGAGATCCTATGATGGCCACACTTACAATCATCATGAATCCAATGAAGTCCCTGTGTTTTACAGATCTAACTCTTCTCGTGTCACCGATGAAAGAACTTCAGATGTATTACCTCGACAACGGGTTTGGGAATTCAGACATCCTGTGGGATTCCACCACAGTATACCTTATTTTCCAGCAGCAGCACCTAGAAGACAACAAATTCATATTCACAATGAGGATATGGGAAGGCTCAGAGATATTTTCTTTCAGCCATCTTCAAGATATACATTCCAAACAAGCACACAAGCTCCCCCAGTGGTAGAAATTTCCAAATCAACAGTTTTGAGAAAGCTTCAAAAGGTAGTGTATGCTAGGAAGCTGAACTTATATTACAGAAACAATGCTGAAGGAAAACCGATGAAAGAGAAGAAGGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTAAGACTGGTGAAGAGGTGATGCTCACTCCATGCAAGCACATGTTTCATGAGGATTGCATAGTGCCATGGCTAACAACTAAGGGCCAGTGCCCAGTTTGTAGGTCTGTGATTTGTGAGATGGAATGTGAGAACCCTTCATCCTTCAACAACAATGACTTGGCCGCTTTGGAATCTAGCAACCTATTTAATGGAGAGTTTTTATCAGTTTTTAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGTTTGACTTAA 867 0.406 MNIEQMNFPSSHTKLFCTPNKEKYFAWSIEEEGEIMSHHRHNFTPLSRQRGLRSYDGHTYNHHESNEVPVFYRSNSSRVTDERTSDVLPRQRVWEFRHPVGFHHSIPYFPAAAPRRQQIHIHNEDMGRLRDIFFQPSSRYTFQTSTQAPPVVEISKSTVLRKLQKVVYARKLNLYYRNNAEGKPMKEKKEKDEDGKRCAICLEDFKTGEEVMLTPCKHMFHEDCIVPWLTTKGQCPVCRSVICEMECENPSSFNNNDLAALESSNLFNGEFLSVFRAMEEAFQLGSLT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01138 288 Pfam Ring finger domain 197 239 IPR001841 -
Viun11g01138 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 243 IPR013083 -
Viun11g01138 288 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Viun11g01138 288 SMART ring_2 198 238 IPR001841 -
Viun11g01138 288 SUPERFAMILY RING/U-box 187 245 - -
Viun11g01138 288 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 91 240 - -
Viun11g01138 288 SMART ringv_2 197 239 IPR011016 GO:0008270
Viun11g01138 288 FunFam RING/U-box superfamily protein 183 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01138 Viun-Chr11 24908365 24909780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01138 77 286 C3H Transcription Factor Family AT3G58720 38.009 8.38e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01138 - - vun:114168869 588.956