Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01132 ATGGCTTCCAACGAAAGTCAACGCTGTTCTTCATCACACACTAAAAATTTTGATGTGTTTGTTAGCTTCAGAGGCACAGATACTCGTAACAGTTTCACAAATCATCTTTTTGAAGCTCTTCAAAGAAAAGGAGTTGTTGCCTTCAGAGATGACCAAACCATCCAGAAAGGTGACTTCTTGGACTCTGAGCTCTTACACGCAATTGAAGGATCACAAGTTTTCATTGTTGTCTTCTCAAAGAACTATGCATCATCCACATGGTGCATGAAAGAGCTTACAAAGATCGTTGCTTGGGTTCAACAAACGGCTCGAACTTTGCTCCCTATTTTCTATGATGTCGATCCTTCTGAGGTACGAAAACAAAGTGGAGAGTTTGCAAAAGCTTTTGCCGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAGAATGGAGGGAAGCTCTCAAAACAAGTTGCGATCGTTGTGGGTGGGATCTGAAAAATAAGAAACAATATGAAGAAATTGAAAACGTTGTTGAAAAGGTAAACGACATATTGGGTCGTAATCAAATTTGGAGTTTTGGAGATGATTTAGTTGACATGCATTCTCGTGTTGAAGAATTGGAAGAACTGCTAGATCTGAGTGCAAATGATATTGTTCGCATTGTGGGAATTTGTGGGATGGGTGGGATAGGGAAGACAACAGTTGCAACTTCGTTGTTTAAAAAAATATCTCCTCAATATAATGCTCGTTGTTACATTGATGATTTAAGCAAAATTTATTGCAATTTTGGAGCAACAAGTGCACAAAAACAACTTCTTTCTCAAGCTCTAAATGAAATAAAAAATATGGAGATACATAATGTTTTCCATGGAACTATGTTGATAAGAACTAGACTACGTCATTTAAAGATGCTTGTGGTTCTTGATAATGTTGATGAAGTTGAACAATTAGAGAAATTGGGTTTGCGTCCTGAATATTTAGGTGCAGGGAGTAGACTCATCATAATTTCTAGAGATTGTCATATCTTACAAAATTATGGAGTAAATGAAGTTTACAATGTTGAAGTCTTGGATGAAACTCAAGCTCTTCAATTATTTTGCAAAAAAGCTTTCAAATCTCACGATATTCCGAAAGAATACAAGGAGTTGACATTAGAGGCACTGAAGTATGCCAATGGTCTTCCGTTAGCAATTAAAGTATTGGGGTCATTTTTACACGATCGAGATGTTTGTGAATGGAGAAGTGCATTGGCTAGAATGAATGAAAATCCAAGCAAAGATATCATGGATGTGTTGCGGATAAGTTTTGATAGTTTGGAGAATTTAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCAATAGGAATGGCTATTCTTGGAAGCCAACAGTGAAGAGACTTCTAGAGTATCGACAATTTTATCCAGACATCGGTATGAAAGTTTTGATCGAGAAATCACTAATAAGTTGTCAAAATAAGGAGATTGAAATGCATGACTTGTTGAAAGAGTTGGGTAAGAATATTGTTCGAGAAAAAGCACCCAAAGAACCAAGTAAGTGGAGCAGACTATGGAGCTACAAGGATTTCCAAAAGGTCATGAAGTTAAATAAGGAAGCCAAAAATGTTGAAGCTATAGTTATTCAGCAGAATGAAAACGAGTTTGTACAAGAAAGGATAAGAGTGGACGCTCTATCAAAAATGGGTCACCTTGAGTTGCTAAGTCTGAACAATGTGAAATGTTTTGGAACTCTCGACTACATCTCTAATGAACTGAGATATTTGTATTGGGATCCCTTTCCTTGGATGTCTTTACCATCAACTTTCCATCTAGATCAACTTGTAGAACTGATCCTGCCTCGTAGCAATATCAAGCAATTATGGAAAGGAAAAAAGTGTGTGCCCAATTTGACAAAACTGGATCTCAATCACTCCAAAAATCTTATTGAGGTGCCAGACTTAAGTGAGGTTCCACTTCTTATGGATCTTAATCTTGAAGGATGTATAAAACTAGTCCAAATCCATCCATCCATTGGTATTCTAAGGCAACTTCGTCACTTGGATTTGAGAAATTGTAAAAATCTTATTGAGGTGCCAAACTTAAGTGAGGTTGAACGTCTTACAGATCTTACTCTTGAAGGATGCATAGAAGTTGTCCATATTGATTCATCCATTGGTAATCTAAGACAACTTATATATTTGAATTTGAAAAATTGTAAAAATCTTGTCCTTAATCTGAATATCCTTTCTGGGATCACTTCTCTTAGGACATTAATTCTCTCCGGCTGTTCAAATTTACATAATAGTAAGATGTTAAGGGACTCAAAGGTCAAAAAACTTCTAATGTCGCCTTTCGATTTTTTGTACCGTCCAAAACCTCAAGATTCGTGTGGCTTGTCATGGTCTTTGTTGTCCTTTTCTGTCCCGTGTTTGGTGTATCTTGACATAAGCTTCTGCAGTCTACTTCAAATCCCAGATGAAATTGGGAACTTAAGTAGTTTAATAATATTAAATTTGGGAGGAAATAAATTTGTGACACTGCCAAACACCATCAAGAGACTTTCCAATCTTCACTGCCTGAACTTGGAACACTGCAAGCGGCTGGAATATTTGCCCGAGCTTCCAACAGTAAAAGAAAGATTTATTGACGAAGACATGAGTTTATACATTTTTGATTGCCCCAAGCTGAGAGATATGGAACACTGTTATAGTACGGTTTTTTCTTGGATGATGCAAAATCTTCAGGTTTACTTGGAACCTGGAATGGAAATTGTTATTCCTGGAAGTGAAATCCCAAAGTGGTTCAATAAACAAAATGCAAGTACATCAATAAGTATGGACCCATCTGATGTTATAGATGACCCAAATTGGATTGGAGTTGCCATTTGTGTTCTATTTGTCACACAACAAGATCCTATGAATTTGGATGAAAATCCTTGTCCTCTCTCTACCATTCAATACTGGGTCGATGATGACTGGCTGTCAACGATTCCAATATATTTCGAGAAAGATCTAGTGACAGTTTACGTGTTGTGGTGA 3030 0.368 MASNESQRCSSSHTKNFDVFVSFRGTDTRNSFTNHLFEALQRKGVVAFRDDQTIQKGDFLDSELLHAIEGSQVFIVVFSKNYASSTWCMKELTKIVAWVQQTARTLLPIFYDVDPSEVRKQSGEFAKAFAEHEERFKDDLEMVKEWREALKTSCDRCGWDLKNKKQYEEIENVVEKVNDILGRNQIWSFGDDLVDMHSRVEELEELLDLSANDIVRIVGICGMGGIGKTTVATSLFKKISPQYNARCYIDDLSKIYCNFGATSAQKQLLSQALNEIKNMEIHNVFHGTMLIRTRLRHLKMLVVLDNVDEVEQLEKLGLRPEYLGAGSRLIIISRDCHILQNYGVNEVYNVEVLDETQALQLFCKKAFKSHDIPKEYKELTLEALKYANGLPLAIKVLGSFLHDRDVCEWRSALARMNENPSKDIMDVLRISFDSLENLEKEIFLDIACFFSNRNGYSWKPTVKRLLEYRQFYPDIGMKVLIEKSLISCQNKEIEMHDLLKELGKNIVREKAPKEPSKWSRLWSYKDFQKVMKLNKEAKNVEAIVIQQNENEFVQERIRVDALSKMGHLELLSLNNVKCFGTLDYISNELRYLYWDPFPWMSLPSTFHLDQLVELILPRSNIKQLWKGKKCVPNLTKLDLNHSKNLIEVPDLSEVPLLMDLNLEGCIKLVQIHPSIGILRQLRHLDLRNCKNLIEVPNLSEVERLTDLTLEGCIEVVHIDSSIGNLRQLIYLNLKNCKNLVLNLNILSGITSLRTLILSGCSNLHNSKMLRDSKVKKLLMSPFDFLYRPKPQDSCGLSWSLLSFSVPCLVYLDISFCSLLQIPDEIGNLSSLIILNLGGNKFVTLPNTIKRLSNLHCLNLEHCKRLEYLPELPTVKERFIDEDMSLYIFDCPKLRDMEHCYSTVFSWMMQNLQVYLEPGMEIVIPGSEIPKWFNKQNASTSISMDPSDVIDDPNWIGVAICVLFVTQQDPMNLDENPCPLSTIQYWVDDDWLSTIPIYFEKDLVTVYVLW 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01132 1009 Pfam TIR domain 16 174 IPR000157 GO:0007165
Viun11g01132 1009 Pfam Leucine rich repeat 808 863 IPR001611 GO:0005515
Viun11g01132 1009 SMART till_3 16 156 IPR000157 GO:0007165
Viun11g01132 1009 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Viun11g01132 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 446 IPR027417 -
Viun11g01132 1009 Gene3D - 9 179 IPR035897 -
Viun11g01132 1009 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Viun11g01132 1009 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Viun11g01132 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 739 IPR044974 GO:0006952
Viun11g01132 1009 Gene3D - 180 347 IPR027417 -
Viun11g01132 1009 Gene3D - 352 436 IPR042197 -
Viun11g01132 1009 SUPERFAMILY "Winged helix" DNA-binding domain 423 531 IPR036390 -
Viun11g01132 1009 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Viun11g01132 1009 Coils Coil 530 550 - -
Viun11g01132 1009 Pfam NB-ARC domain 200 422 IPR002182 GO:0043531
Viun11g01132 1009 PRINTS Disease resistance protein signature 217 232 - -
Viun11g01132 1009 PRINTS Disease resistance protein signature 294 308 - -
Viun11g01132 1009 PRINTS Disease resistance protein signature 676 692 - -
Viun11g01132 1009 PRINTS Disease resistance protein signature 387 401 - -
Viun11g01132 1009 Gene3D Ribonuclease Inhibitor 522 782 IPR032675 -
Viun11g01132 1009 Pfam C-JID domain 923 966 IPR045344 -
Viun11g01132 1009 SUPERFAMILY L domain-like 562 894 - -
Viun11g01132 1009 Gene3D Ribonuclease Inhibitor 788 913 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01132 Viun-Chr11 24775907 24779782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01132 12 831 WRKY Transcription Factor Family AT4G12020 28.926 6.99e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01132 - - vra:106780706 1373.61