Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01127 ATGGCTTCCAACAAAATTCAACGCTGCTCTTCCTCACAGACTAAGAATTTTGATGTGTTTGTTAGCTTTAGAGGAGAAGATACTCGTAACGGTTTCACAGATCATCTTTTTGCCGCTCTTCAAAGAAAAGGAGTTGTTGCCTTCAGAGATGACCAAACCATCGAGAAAGGGGGCTTTTTGGAGTCTGAGCTCTTGCAAGCAATTGAAGGATCACGCGTTTTCATTGTTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACAAAGATCCTCGATTTGGTTGAAGAAACAGGTCGAAGTATGCTCCCTATTTTCTATGATGTCGATCCTTCTGAGGTCCGAAAACAGAGTAGCGAGTTTGCAAAAGCTTTTGCAGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAGAAAAATGGAGGGAAGCTCTCAAAGCAAGTTGCGATCGTTGTGGGTGGGATGTGCAAAACAAGAAACAATATGAAGAAATTGAAAACGTTGTTGAAAAGGTAATCGACATATTGGGTCGTAATCAAATTTGGAGTTTTGGAGATGATTTAGTTGACATGCATTCTCGTGTTGAAGAATTGGAAGAACTGCTAGATCTGAGTGCAAATGATATTGTTCGCATTGTGGGAATTTGTGGGATGGGTGGGATAGGGAAGACAACAGTTGCAACTTCATTGTTTAAAAAAATATCTCCTCAATATAATTCTTGTTGTTACATTGATGATTTAAACAAAATTTATTGCAATTTTGGAGCAACAAGTGCACAAAAACAACTTCTTTCTCAAGCTCTAAATGAAATAAAAAATATGGAGATACATAATGTTTTCCATGGAACTATGTTGATAAGAACTAGACTTCGTCATTTAAAGATGCTTGTGGTTCTTGATAATGTTGATGAAGTTGAACAATTAGAGAAATTGGGTTTGCGTCCAGAATATTTAGGTGCAGGGAGTAGACTCGTCATAATTTCTAGAGATCGTCATATCTTACAAAATTATGGAGTAAATGAAGTTTACAATGTTGAAGTCTTGGATGAAACTCAAGCTCTTCAATTATTTTGCAAAAAAGTTTTCAAATCTCACGATATTCCGAAAGAATACAAGGAGTTGACATTAGAGGCACTGAAGTATGCCAATGGTCTTCCGTTAGCAATTAAAGTATTGGGCTCATTTTTACACGATCGAGATGTTAGTGAATGGAGAAATGCATTGGCTAGAATGAAAGAAAATCCAAGCAAACATATCATGGATGTGTTGAGAATAAGTTATGATGCATTGGAGAATCTAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCAATAGGAATAACTACTCTTATGAGACAAGAGTGAAGAGACTTCTAGAGTATCGCCAATTTTATCCTGACATTGGTATGAAAGTTTTGATCGAGAAATCACTAATAAGTTGTCAAGATGGGGAGATTGAAATGCATGACTTGTTGAAAGAGTTGGGTAAGAGTATCGTCCGAGAAAAAGCACCAAAAGAACCAAGAAAGTGGAACAGGTTATGGAACTACAAGGATCTCCAAAAAGTTATGAAAATAAATAAGGAAACCGAAAATGTTGAAGCTATAGTTATTCATCAGAGCGAAAAAGAGTTTCTAGAAGATGTGGATGCACTCTCAAAAATGAATCAACTGGAGTTGCTGATTCTAGAGAATGTGAACTGTTCTGGAACTCTGGATTGCATTTCTAATGAATTGAGATATCTACAATGGAATCACTTTCCTTTGATGTCTTTGCCATCAAATTTCCATCCAGATCAACTTGTAGAACTGATCCTGCCTCATAGCAATATCAAGAAATTATGGGAAGGCAAAAAGTTTCTGCCTAATCTGACAATGCTGGATATGAGTCACTCCAAATATCTTATTGCGGTGCCAGACTTAAGTGAGGTTCCACGTCTTGAGAGTCTTGATCTTGAAGGATGTATACAACTAGTCGAGATCCATCCATCCATTGGTATTCTAAGAGAACTTCGATGTTTGAATTTGAAAAATTGTAAAAATCTTGTCCTTAACCTGAATATGCTTTTTGGGATCAGTTCTCTTTCGGGCTTATATCTCTCTGGTTGTTCAAAATTACTTAATAGTAAGATGTTAATGGAGCCAAGGGACACAAAACATTTGGAGGAAATTGTTAAAATTACAAATGCCATTCAATTCCCAACATCCTCTGTATACAAACTTCTAATGTTGCCTTTCAATTTTCTCTACCCTCCAAAACCTGAAGATTCACTTGGTTTGGTATTGTCTTTGTCTTCTGTCCCATGTTTGGTTTATCTTGATATAAGCTTCTGCAATCTACTTCGAATCCCAGATGAAATTGGGAACTTACATTCTTTAGTAGGACTAAATCTGGGGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCTAATCTTGAACGTTTGTACTTGGAATACTGCAAGCAGCTGAAATATTTGCCCGAGCTTCCAACAATAAAACAAAAAAATATTGGCGGATACTATGGGTTGGGATTATACATTTTTGATTGCACCAAGTTAAGTGATATGGAACACTGTTATAGCATGGTTTTTTCTTGGATGACGCAAAATCTTCAGGTTTTCTTCCAACCTACTATTTCCTCTGCTCGGATTGAAATGGAAATTGTTATTCCTGGAAGTGAAATTCCAAAGTGGTTCAATAAACAAAGTGCAAGTACATCAATAAGTATGGACCCATCTGATGTTATAGATGACCCAAATTGGATAGGTGTTGCCATTTGTGTTCTATTTGTCACACTCCAAGATCCTATGAATCTGGGTGAAAGAGATGATGATCATTTATCTAATCTTTGGTTCGGTGTCAATAATTCCAAGCGAAGATGGTATATAGGAGTTCCAATATATTTTAAGAAAGATCTAGTGACAGTTGGATTAGATCACTTGGTTACGGTGTTTTACTCTCGACAACAATTCATTCATCTTCTAAGCACACCTCCAAATACCATGCATGATCTCTATCAAACTGAATTTGGAACTTTTATTCATCATCCTAAAGGTTTACGAATTGTCGTGAAGAAGTGCGGGTATCGTTGGGTATTTAAGGAGGATCTTCAACAATTCAACTCAAACATGTTTTTCAGCACAAATTCCTCATCTCGAAAGAGGAAACTTCTAACAAGCGATTAA 3219 0.3669 MASNKIQRCSSSQTKNFDVFVSFRGEDTRNGFTDHLFAALQRKGVVAFRDDQTIEKGGFLESELLQAIEGSRVFIVVFSKDYASSTWCMKELTKILDLVEETGRSMLPIFYDVDPSEVRKQSSEFAKAFAEHEERFKDDLEMVEKWREALKASCDRCGWDVQNKKQYEEIENVVEKVIDILGRNQIWSFGDDLVDMHSRVEELEELLDLSANDIVRIVGICGMGGIGKTTVATSLFKKISPQYNSCCYIDDLNKIYCNFGATSAQKQLLSQALNEIKNMEIHNVFHGTMLIRTRLRHLKMLVVLDNVDEVEQLEKLGLRPEYLGAGSRLVIISRDRHILQNYGVNEVYNVEVLDETQALQLFCKKVFKSHDIPKEYKELTLEALKYANGLPLAIKVLGSFLHDRDVSEWRNALARMKENPSKHIMDVLRISYDALENLEKEIFLDIACFFSNRNNYSYETRVKRLLEYRQFYPDIGMKVLIEKSLISCQDGEIEMHDLLKELGKSIVREKAPKEPRKWNRLWNYKDLQKVMKINKETENVEAIVIHQSEKEFLEDVDALSKMNQLELLILENVNCSGTLDCISNELRYLQWNHFPLMSLPSNFHPDQLVELILPHSNIKKLWEGKKFLPNLTMLDMSHSKYLIAVPDLSEVPRLESLDLEGCIQLVEIHPSIGILRELRCLNLKNCKNLVLNLNMLFGISSLSGLYLSGCSKLLNSKMLMEPRDTKHLEEIVKITNAIQFPTSSVYKLLMLPFNFLYPPKPEDSLGLVLSLSSVPCLVYLDISFCNLLRIPDEIGNLHSLVGLNLGGNKFVTLPSTIKQLSNLERLYLEYCKQLKYLPELPTIKQKNIGGYYGLGLYIFDCTKLSDMEHCYSMVFSWMTQNLQVFFQPTISSARIEMEIVIPGSEIPKWFNKQSASTSISMDPSDVIDDPNWIGVAICVLFVTLQDPMNLGERDDDHLSNLWFGVNNSKRRWYIGVPIYFKKDLVTVGLDHLVTVFYSRQQFIHLLSTPPNTMHDLYQTEFGTFIHHPKGLRIVVKKCGYRWVFKEDLQQFNSNMFFSTNSSSRKRKLLTSD 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01127 1072 Gene3D - 352 436 IPR042197 -
Viun11g01127 1072 Gene3D - 182 350 IPR027417 -
Viun11g01127 1072 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 715 IPR044974 GO:0006952
Viun11g01127 1072 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Viun11g01127 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Viun11g01127 1072 Gene3D - 13 181 IPR035897 -
Viun11g01127 1072 PRINTS Disease resistance protein signature 387 401 - -
Viun11g01127 1072 PRINTS Disease resistance protein signature 217 232 - -
Viun11g01127 1072 PRINTS Disease resistance protein signature 294 308 - -
Viun11g01127 1072 PRINTS Disease resistance protein signature 626 642 - -
Viun11g01127 1072 Pfam NB-ARC domain 200 426 IPR002182 GO:0043531
Viun11g01127 1072 SMART till_3 16 156 IPR000157 GO:0007165
Viun11g01127 1072 Pfam C-JID domain 901 1048 IPR045344 -
Viun11g01127 1072 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Viun11g01127 1072 SUPERFAMILY L domain-like 556 842 - -
Viun11g01127 1072 Pfam TIR domain 16 164 IPR000157 GO:0007165
Viun11g01127 1072 Gene3D Ribonuclease Inhibitor 507 731 IPR032675 -
Viun11g01127 1072 Gene3D Ribonuclease Inhibitor 732 883 IPR032675 -
Viun11g01127 1072 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Viun11g01127 1072 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Viun11g01127 1072 SUPERFAMILY "Winged helix" DNA-binding domain 423 531 IPR036390 -
Viun11g01127 1072 Pfam Leucine rich repeat 777 831 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01127 Viun-Chr11 24678672 24685809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01127 12 826 WRKY Transcription Factor Family AT4G12020 30.687 2.09e-87 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01127 - - vun:114169377 1580.07