LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01124	ATGCCTTCTAACGCCATCATCCACCACACCTCTTCTTCATCTCATGCAATTAGCAGAAATGACGTATTTGTGAGCTTCCGCGGTGAAGACACGCGCAACAACTTCATTGGTTTTCTCTTTCAAGCTCTCCATAGAAAAGGCATTGGTGCCTTCAAAGATGACGAAGATCTCAAAAAAGGTGAATCCATAGCACCCAAGCTTCTGCAATCCATTCAAGACTCTCGAGTTTACCTTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACTTGGTGCTTACGTGAACTGGCAGAGATACTTAACTGCGTTGAAACTTCAGTAAGACGTGTTATACCTATCTTTTATGATGTTGATCCTTCGGTGGTGCGCAAACAGAGTGGATGCTATGACAAAGCATTTGCAGAACACGAGAAGAGATTCAGAGGAGATAAAGTGAAGATGGAGGAAGCCCAGAGATGGAGAGAAGCTCTCACAGAAGTGGCCAATCTCTCTGGTTGGGATGTCCGAAATAAGTCACAACATATCGTGATTGAAAAAATTGTTCAGGAGATATTAAGTATATTGAGTCCCAATTTTTCAAGTATTCCAAATGATCTAGTTGGGGTGGAATCTCCTCTCGAAGAACTACAACAACTTTTACTTTGCGACCCAGTTGATGATGTACGCATTGTAGGAATTTGTGGAATGGGTGGAATAGGAAAGACTACACTTGCTACTGTTCTATATGGTATAATCTCTCATCAATATAATGCTCGTTGTTTTATTGATGATGTAAACAAGATTTATAGAGATTGTGGAACAATTGGTGTAGTAAAGCAGCTCCTTCATCAAACTCTAAATGAAGAAAACCTTCAGATACACAATCTTTATAATGCAGCAAATTTGATGCGAAGAAGGTTTCGTTGTGTAAAGACTCTTATAGTTCTTGACCATGTTGATGAAGTTAAAGAACGAGAGAAATTAGTGGTGAATCGGGAATGGTTAGGAGAAGGAAGTAGAGTCATCATAATTTCCAGAGACAAGCATATCTTAAAAGAGTTTGGAGTGACGACAGTGTACGATGTTCAACTCTTGAATGATGCTAATTCTCTGAAGTTGTTTTGTAAAAAGGCTTTCAACAGTGATGAAATTGTAGGAGGTTACAAAGTCTTGACACATGCTGTGTTACAATATGCTAAGAGCCTACCACTAGCAATTAAAGTACTAGGCTCATTTTTGTTTGGTCGAAGGGTGTCAGAGTGGAGAAGTGCCTTGGTTAGGTTGAAAGAGAATCCCAACAAAGATATTTTGGATGTGCTTCAAATCAGTTACGATGGACTAGATGACTTGGAAAAGCAAATATTTCTGGACATTGCTTGTTTCTTCAGTGGGTATGAGGAGTTGTATGTGAAGAAAGTTCTTGATTGTCGTGGATTTCATCCTGAAATTGGAATCAGAGTCCTCCTTGACAAGTCACTCGTAAACAATTTCCATGGATTCATTAAAATGCATGATTTGTTGAAAGCTTTGGGCAGGAAAATTGTTCAAGGCAATTCACCCAAGGAGCCAGCAAAGTGGAGCAGGTTGTGGTTATATGAACATTTGTTTAGTATGTCCAAGGCAAAGGAAACAGCGAACACTGAAGCGATTGTTTTGGACATGTTAAGAGAGATAGAAGTATTGGCGACTGATGCTGAAGAGTTGTCCAAAATGAGTAACCTTCGGTTGCTTATACTCCATGATGTGAAGTTTATGGGAAACCTAAGTTTTCTGTCCAATAAACTGCAGTTTCTTGAGTGGTCTCACTATCCTTTCTCCTATTTACCATCAAGTTTTCAACCGAATTCACTTGTTGAATTGATCTTGCCACATGACAACATCAAACAACTATGGAAAGGCACAAAGTATCTGCCAAATCTAAGAGCTTTGGATCTCAGAGACTGCAAGAATCTTATTAAGATTCCAGACTTTACAGGGCTTCCAAATCTTGAGTGGATAATTCTTGACAGATGCACAAAACTTGTCTGCATCCATCCATCAGTTGGACTTCTAAGAAAGCTTGCTCTTTTGAGTTTGCAAAACTGCATAAATTTAGTGAGTCTACCAAGCAATATATTGGGTCTGAATTCTCTTGAATATCTGAATATCTCTGGCTGTTCAAGAGTATTTAGTAACCACCTTTTAGATAAACCCATACATGACCATTCAAAGATTCTTGATATCAGGGAAAATTCCATGCAATCCCAATCTACATCCTCTTCCATCATAAAGAAACTCATTGTTCCTTTCAATTTCTCGTACTACAGAGGGTTTAGAAATTCACGTGGCTGTTTGTTGCATTCCTTGCATAACTTCTTCTGTATGCATGACCTTAATATAAGTTTCTGCAATCTAGCACAAATCCCTGATGCTATTGGATCCATGCATTCCCTAGAAACCTTAAATTTGGGGGGAAACCACTTTGTTACCCTCCCTTCGAGCATCAACAAGCTTTCCAAACTCGTACATTTAAACTTGGAGCATTGCAAGCAATTAAGATTTTTCCCTGAGATGCCATCACCTACTGCTTTGCCTGTCACAAGAGAAACCTACAGTTTTGGTCGTTATGAAAGGGGATTACTTATTTTCAACTGTCCTAAAATAGTTGATATTGAAGGTTGTCAGAGAATGACTTTTGCATGGTTCTTACAAATCCTTCGGTTGAGCAAAGAATCGCGTACCCCTATTAATTTGATTGATATTGTTCTTCCTGGTAATCAGATTCCGAGATGGTTCAATCAGAGTCTTGGTACTTCAATTAGCTTAGACCCATCTCCCATTATGCATGACAATAACTGGATGGGCATTGCGTTCAGCTTGGTGTTTGTGGCATATGAAAACCAGTCTAATTTGGATCTCGATTTAGGATCCTATGTAGGCATTGGTTTTCACACGAACCCCTTTTTTTCCTCTATCGAAATGCCAGTACTTCTTACAGATTTGGTCACCGTCGGAATGCATCACTTGTGGCTACTCTTCTTGACCAGGGAAGAATTTTTTTCTTATTTTCAAATAGAAGGAACGCTTTATGTTAACGGCATGGAAATGCATACCACCGCCGGTGATTCTCAAGGTTTGCACATTGAGGTGATCAGTTGCGGATATCAATGGGTGTTTGAGAAGGATCTGGATAACCTAAACCCCACAAAAATTAGGAAAGAACACATCAACACTCATTTTGGCGATGAAGGAAATTCAATCCTTTCTTTAGTAGATGGACACTAG	3240	0.3932	MPSNAIIHHTSSSSHAISRNDVFVSFRGEDTRNNFIGFLFQALHRKGIGAFKDDEDLKKGESIAPKLLQSIQDSRVYLVVFSKNYASSTWCLRELAEILNCVETSVRRVIPIFYDVDPSVVRKQSGCYDKAFAEHEKRFRGDKVKMEEAQRWREALTEVANLSGWDVRNKSQHIVIEKIVQEILSILSPNFSSIPNDLVGVESPLEELQQLLLCDPVDDVRIVGICGMGGIGKTTLATVLYGIISHQYNARCFIDDVNKIYRDCGTIGVVKQLLHQTLNEENLQIHNLYNAANLMRRRFRCVKTLIVLDHVDEVKEREKLVVNREWLGEGSRVIIISRDKHILKEFGVTTVYDVQLLNDANSLKLFCKKAFNSDEIVGGYKVLTHAVLQYAKSLPLAIKVLGSFLFGRRVSEWRSALVRLKENPNKDILDVLQISYDGLDDLEKQIFLDIACFFSGYEELYVKKVLDCRGFHPEIGIRVLLDKSLVNNFHGFIKMHDLLKALGRKIVQGNSPKEPAKWSRLWLYEHLFSMSKAKETANTEAIVLDMLREIEVLATDAEELSKMSNLRLLILHDVKFMGNLSFLSNKLQFLEWSHYPFSYLPSSFQPNSLVELILPHDNIKQLWKGTKYLPNLRALDLRDCKNLIKIPDFTGLPNLEWIILDRCTKLVCIHPSVGLLRKLALLSLQNCINLVSLPSNILGLNSLEYLNISGCSRVFSNHLLDKPIHDHSKILDIRENSMQSQSTSSSIIKKLIVPFNFSYYRGFRNSRGCLLHSLHNFFCMHDLNISFCNLAQIPDAIGSMHSLETLNLGGNHFVTLPSSINKLSKLVHLNLEHCKQLRFFPEMPSPTALPVTRETYSFGRYERGLLIFNCPKIVDIEGCQRMTFAWFLQILRLSKESRTPINLIDIVLPGNQIPRWFNQSLGTSISLDPSPIMHDNNWMGIAFSLVFVAYENQSNLDLDLGSYVGIGFHTNPFFSSIEMPVLLTDLVTVGMHHLWLLFLTREEFFSYFQIEGTLYVNGMEMHTTAGDSQGLHIEVISCGYQWVFEKDLDNLNPTKIRKEHINTHFGDEGNSILSLVDGH	1079

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01124	1079	PRINTS	Disease resistance protein signature	391	405	-	-
	Viun11g01124	1079	PRINTS	Disease resistance protein signature	222	237	-	-
	Viun11g01124	1079	PRINTS	Disease resistance protein signature	298	312	-	-
	Viun11g01124	1079	PRINTS	Disease resistance protein signature	627	643	-	-
	Viun11g01124	1079	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	189	-	-
	Viun11g01124	1079	Pfam	NB-ARC domain	202	426	IPR002182	GO:0043531
	Viun11g01124	1079	Gene3D	-	356	440	IPR042197	-
	Viun11g01124	1079	ProSiteProfiles	TIR domain profile.	18	187	IPR000157	GO:0007165
	Viun11g01124	1079	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	165	IPR035897	-
	Viun11g01124	1079	Gene3D	-	189	352	IPR027417	-
	Viun11g01124	1079	SUPERFAMILY	"Winged helix" DNA-binding domain	427	528	IPR036390	-
	Viun11g01124	1079	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	450	IPR027417	-
	Viun11g01124	1079	Gene3D	Ribonuclease Inhibitor	546	723	IPR032675	-
	Viun11g01124	1079	Gene3D	Ribonuclease Inhibitor	763	928	IPR032675	-
	Viun11g01124	1079	Pfam	TIR domain	21	193	IPR000157	GO:0007165
	Viun11g01124	1079	SMART	till_3	19	162	IPR000157	GO:0007165
	Viun11g01124	1079	SUPERFAMILY	L domain-like	551	849	-	-
	Viun11g01124	1079	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	714	IPR044974	GO:0006952
	Viun11g01124	1079	Gene3D	-	17	188	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01124	Viun-Chr11	24526291	24531887	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01124	21	829	WRKY Transcription Factor Family	AT4G12020	31.108	4.72e-84	298

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01124	-		-	gmx:100820213	1496.87