LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01123	ATGCCTTCTAACGCCATCATCCACCACACCTCTTCTTCATCTCATGCAATTAGCAGAAATGACGTATTTGTGAGCTTCCGCGGTGAAGACACGCGCAACAACTTCATTGGTTTTCTCTTTCAAGCTCTCCATAGAAAAGGCATTGGTGCCTTCAAAGATGACGAAGATCTCAAAAAAGGTGAATCCATAGCACCCAAGCTTCTGCAATCCATTCAAGACTCTCGAGTTTACCTTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACTTGGTGCTTACGTGAACTGGCAGAGATACTTAACTGCGTTGAAACTTCAGTAAGACGTGTTATACCTATCTTTTATGATGTTGATCCTTCGGTGGTGCGCAAACAGAGTGGATGCTATGACAAAGCATTTGCAGAACACGAGAAGAGATTCAGAGGAGATAAAGTGAAGATGGAGGAAGCCCAGAGATGGAGAGAAGCTCTCACAGAAGTGGCCAATCTCTCTGGTTGGGATGTCCGAAATAAGTCACAACATATCGTGATTGAAAAAATTGTTCAGGAGATATTAAGTATATTGAGTCCCAATTTTTCAAGTATTCCAAATGATCTAGTTGGGGTGGAATCTCCTCTCGAAGAACTACAACAACTTTTACTTTGCGACCCAGTTGATGATGTACGCATTGTAGGAATTTGTGGAATGGGTGGAATAGGAAAGACTACACTTGCTACTGTTCTATATGGTATAATCTCTCATCAATATAATGCTCGTTGTTTTATTGATGATGTAAACAAGATTTATAGAGATTGTGGAACAATTGGTGTAGTAAAGCAGCTCCTTCATCAAACTCTAAATGAAGAAAACCTTCAGATACACAATCTTTATAATGCAGCAAATTTGATGCGAAGAAGGTTTCGTTGTGTAAAGACTCTTATAGTTCTTGACCATGTTGATGAAGTTAAAGAACGAGAGAAATTAGTGGTGAATCGGGAATGGTTAGGAGAAGGAAGTAGAGTCATCATAATTTCCAGAGACAAGCATATCTTAAAAGAGTTTGGAGTGACGACAGTGTACGATGTTCAACTCTTGAATGATGCTAATTCTCTGAAGTTGTTTTGTAAAAAGGCTTTCAACAGTGATGAAATTGTAGGAGGTTACAAAGTCTTGACACATGCTGTGTTACAATATGCTAAGAGCCTACCACTAGCAATTAAAGTACTAGGCTCATTTTTGTTTGGTCGAAGGGTGTCAGAGTGGAGAAGTGCCTTGGTTAGGTTGAAAGAGAATCCCAACAAAGATATTTTGGATGTGCTTCAAATCAGTTACGATGGACTAGATGACTTGGAAAAGCAAATATTTCTGGACATTGCTTGTTTCTTCAGTGGGTATGAGGAGTTGTATGTGAAGAAAGTTCTTGATTGTCGTGGATTTCATCCTGAAATTGGAATCAGAGTCCTCCTTGACAAGTCACTCGTAAACAATTTCCATGGATTCATTAAAATGCATGATTTGTTGAAAGCTTTGGGCAGGAAAATTGTTCAAGGCAATTCACCCAAGGAGCCAGCAAAGTGGAGCAGGTTGTGGTTATATGAACATTTGTTTAGTATGTCCAAGGCAAAGGAAACAGCGAACACTGAAGCGATTGTTTTGGACATGTTAAGAGAGATAGAAGTATTGGCGACTGATGCTGAAGAGTTGTCCAAAATGAGTAACCTTCGGTTGCTTATACTCCATGATGTGAAGTTTATGGGAAACCTAAGTTTTCTGTCCAATAAACTGCAGTTTCTTGAGTGGTCTCACTATCCTTTCTCCTATTTACCATCAAGTTTTCAACCGAATTCACTTGTTGAATTGATCTTGCCACATGACAACATCAAACAACTATGGAAAGGCACAAAGTATCTGCCAAATCTAAGAGCTTTGGATCTCAGAGACTGCAAGAATCTTATTAAGATTCCAGACTTTACAGGGCTTCCAAATCTTGAGTGGATAATTCTTGACAGATGCACAAAACTTGTCTGCATCCATCCATCAGTTGGACTTCTAAGAAAGCTTGCTCTTTTGAGTTTGCAAAACTGCATAAATTTAGTGAGTCTACCAAGCAATATATTGGGTCTGAATTCTCTTGAATATCTGAATATCTCTGGCTGTTCAAGAGTATTTAGTAACCACCTTTTAGATAAACCCATACATGACCATTCAAAGATTCTTGATATCAGGGAAAATTCCATGCAATCCCAATCTACATCCTCTTCCATCATAAAGAAACTCATTGTTCCTTTCAATTTCTCGTACTACAGAGGGTTTAGAAATTCACGTGGCTGTTTGTTGCATTCCTTGCATAACTTCTTCTGTATGCATGACCTTAATATAAGTTTCTGCAATCTAGCACAAATCCCTGATGCTATTGGATCCATGCATTCCCTAGAAACCTTAAATTTGGGGGGAAACCACTTTGTTACCCTCCCTTCGAGCATCAACAAGCTTTCCAAACTCGTACATTTAAACTTGGAGCATTGCAAGCAATTAAGATTTTTCCCTGAGATGCCATCACCTACTGCTTTGCCTGTCACAAGAGAAACCTACAGTTTTGGTCGTTATGAAAGGGGATTACTTATTTTCAACTGTCCTAAAATAGTTGATATTGAAGGTTGTCAGAGAATGACTTTTGCATGGTTCTTACAAATCCTTCGGATTCCGAGATGGTTCAATCAGAGTCTTGGTACTTCAATTAGCTTAGACCCATCTCCCATTATGCATGACAATAACTGGATGGGCATTGCGTTCAGCTTGGTGTTTGTGGCATATGAAAACCAGTCTAATTTGGATCTCGATTTAGGATCCTATGTAGGCATTGGTTTTCACACGAACCCCTTTTTTTCCTCTATCGAAATGCCAGTACTTCTTACAGATTTGGTCACCGTCGGAATGCATCACTTGTGGCTACTCTTCTTGACCAGGGAAGAATTTTTTTCTTATTTTCAAATAGAAGGAACGCTTTATGTTAACGGCATGGAAATGCATACCACCGCCGGTGATTCTCAAGGTTTGCACATTGAGGTGATCAGTTGCGGATATCAATGGGTGTTTGAGAAGGATCTGGATAACCTAAACCCCACAAAAATTAGGAAAGAACACATCAACACTCATTTTGGCGATGAAGGAAATTCAATCCTTTCTTTAGTAGATGGACACTAG	3180	0.3937	MPSNAIIHHTSSSSHAISRNDVFVSFRGEDTRNNFIGFLFQALHRKGIGAFKDDEDLKKGESIAPKLLQSIQDSRVYLVVFSKNYASSTWCLRELAEILNCVETSVRRVIPIFYDVDPSVVRKQSGCYDKAFAEHEKRFRGDKVKMEEAQRWREALTEVANLSGWDVRNKSQHIVIEKIVQEILSILSPNFSSIPNDLVGVESPLEELQQLLLCDPVDDVRIVGICGMGGIGKTTLATVLYGIISHQYNARCFIDDVNKIYRDCGTIGVVKQLLHQTLNEENLQIHNLYNAANLMRRRFRCVKTLIVLDHVDEVKEREKLVVNREWLGEGSRVIIISRDKHILKEFGVTTVYDVQLLNDANSLKLFCKKAFNSDEIVGGYKVLTHAVLQYAKSLPLAIKVLGSFLFGRRVSEWRSALVRLKENPNKDILDVLQISYDGLDDLEKQIFLDIACFFSGYEELYVKKVLDCRGFHPEIGIRVLLDKSLVNNFHGFIKMHDLLKALGRKIVQGNSPKEPAKWSRLWLYEHLFSMSKAKETANTEAIVLDMLREIEVLATDAEELSKMSNLRLLILHDVKFMGNLSFLSNKLQFLEWSHYPFSYLPSSFQPNSLVELILPHDNIKQLWKGTKYLPNLRALDLRDCKNLIKIPDFTGLPNLEWIILDRCTKLVCIHPSVGLLRKLALLSLQNCINLVSLPSNILGLNSLEYLNISGCSRVFSNHLLDKPIHDHSKILDIRENSMQSQSTSSSIIKKLIVPFNFSYYRGFRNSRGCLLHSLHNFFCMHDLNISFCNLAQIPDAIGSMHSLETLNLGGNHFVTLPSSINKLSKLVHLNLEHCKQLRFFPEMPSPTALPVTRETYSFGRYERGLLIFNCPKIVDIEGCQRMTFAWFLQILRIPRWFNQSLGTSISLDPSPIMHDNNWMGIAFSLVFVAYENQSNLDLDLGSYVGIGFHTNPFFSSIEMPVLLTDLVTVGMHHLWLLFLTREEFFSYFQIEGTLYVNGMEMHTTAGDSQGLHIEVISCGYQWVFEKDLDNLNPTKIRKEHINTHFGDEGNSILSLVDGH	1059

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01123	1059	ProSiteProfiles	TIR domain profile.	18	187	IPR000157	GO:0007165
	Viun11g01123	1059	Gene3D	-	17	188	IPR035897	-
	Viun11g01123	1059	Gene3D	Ribonuclease Inhibitor	735	857	IPR032675	-
	Viun11g01123	1059	Gene3D	Ribonuclease Inhibitor	546	722	IPR032675	-
	Viun11g01123	1059	Pfam	TIR domain	21	193	IPR000157	GO:0007165
	Viun11g01123	1059	SUPERFAMILY	"Winged helix" DNA-binding domain	427	528	IPR036390	-
	Viun11g01123	1059	PRINTS	Disease resistance protein signature	298	312	-	-
	Viun11g01123	1059	PRINTS	Disease resistance protein signature	627	643	-	-
	Viun11g01123	1059	PRINTS	Disease resistance protein signature	391	405	-	-
	Viun11g01123	1059	PRINTS	Disease resistance protein signature	222	237	-	-
	Viun11g01123	1059	Gene3D	-	189	352	IPR027417	-
	Viun11g01123	1059	Gene3D	-	356	440	IPR042197	-
	Viun11g01123	1059	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	450	IPR027417	-
	Viun11g01123	1059	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	189	-	-
	Viun11g01123	1059	SMART	till_3	19	162	IPR000157	GO:0007165
	Viun11g01123	1059	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	165	IPR035897	-
	Viun11g01123	1059	SUPERFAMILY	L domain-like	551	849	-	-
	Viun11g01123	1059	Pfam	NB-ARC domain	202	426	IPR002182	GO:0043531
	Viun11g01123	1059	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	855	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01123	Viun-Chr11	24526291	24531887	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01123	21	829	WRKY Transcription Factor Family	AT4G12020	31.108	3.98e-84	298

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01123	-		-	gmx:100820213	1457.97