Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01111 ATGGCTACTACAATAACAGAGCATGAGTCCTCATCAAGTACTTCGCAGGTCCTCAACTACACCCCCACTACCACCACCTCCGACGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGCATGGAGAAGACAACGAGAACGACTCCGCCGGCATGGGATGGTGGTCATCGGCAGCGTGCGACGGCGCGGGACGGAGGGCGTTGGGGAAGGTGTTGGACCCGAGGGAGAAGTGGGTCCAGGAATGGAACAGAGTGTTCCTGCTAGTGTGCGGCGCGGGGTTGTTCGTGGACCCTCTGTTCTTCTACGCGCTCTCCGTTAGTGACTCGTGCATGTGCGTGTTCGTTGACGGGTGGCTCGCCGTTACCGTGACGGTGCTGCGGTGCATGACGGACGCGCTTCACCTGTGGAATATGGTGATCAGAATGAAGATGGCCAAACGCGCGTTCGGGTTGGGCGCCGCCGCCGGACTCAGAGAAACACGGCCGCGCACCGTCGCGCTAGGGTATCTTAAGTCACGGACGGGATTCGTTTTTGATTTGTTCGTGATTCTTCCTCTGCCACAGATAGTGCTTTGGGTGGCAATTCCGTCGTTATTGGAGAAAGGTTCAGTGACGTTGGTGATGACAGTGTTCTTAATCATATTTCTGTTCCAATACCTTCCCAAAATTTATCATTCTGTTTGTCATCTACGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATAGCTTATTTCGTTGCTTCCCATGCAGCAGGAGCATGTTGGTACTTGCTGGGGATTCAAAGGGCAGCACAGTGTCTGAAAGTGCAGTGCGGAAAAACAAGTGGTTGTAGCACAAACATTTTGTCATGTCAAAGCCCTGTATACTATGGAAGCAAGAGTTTGTTAGTTAGGGATAGAGCAAGGTTGGCTTGGGCAGAGAACAGGGACGTGTGGCACACATGCTTGAAGGGCCCTGACAGTTACAACTATGGAGCTTATAGATGGACCGTTCAGCTCGTCACTAATGATAATCGTTTGGAGAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTTAGCACCTTTGGAAACCTAGAAAGTACAACAGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTAACTATGTTGATCGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGAAGGTTGCCACAAGGGTTTCGACAACGTGTGCGTAACTATGAGAGACAACGTTGGGCGGCCATGAGAGGGGTTGATGAATGCGAGATGACCAGAAATCTTCCTGAAGGTTTAAGAAGAGACATCAAGTACCATCTTTGTCTAGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGAGCTGGTTCTTGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTGGTGAGGGGTCACCTTCAAAGCAGCCAAGTCCTAAGAGATGGTGTGCAGAGTTGCTGCATGTTAGGGCCAGGAAACTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATAGAGCGTCTTCCACCATCTTCATCCACACTCATAACCTTGGAAACCACAGAGGCTTTTGGCCTCGAAGCCGAGGACGTGAAGTACGTGACGCAACATTTCAGGTACACATTTGTGAAGGAAAAGGTGAAGAGAAGTGCGAGGTATTACTCACCAGGCTGGAGAACTTGGGCTGCAGTCGCCATTCAATTGGCTTGGAGAAGGTACAAGCATAGGTTGACTTTGACTTCTCTGTCCTTCATAAGACCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGACTTCGCCTCTACACTGCCTTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2040 0.4922 MATTITEHESSSSTSQVLNYTPTTTTSDEEEEEEEEKEHGEDNENDSAGMGWWSSAACDGAGRRALGKVLDPREKWVQEWNRVFLLVCGAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMVIRMKMAKRAFGLGAAAGLRETRPRTVALGYLKSRTGFVFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAQCLKVQCGKTSGCSTNILSCQSPVYYGSKSLLVRDRARLAWAENRDVWHTCLKGPDSYNYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVQSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01111 679 SUPERFAMILY cAMP-binding domain-like 408 596 IPR018490 -
Viun11g01111 679 MobiDBLite consensus disorder prediction 1 49 - -
Viun11g01111 679 SUPERFAMILY Voltage-gated potassium channels 72 403 - -
Viun11g01111 679 ProSiteProfiles cAMP/cGMP binding motif profile. 482 592 IPR000595 -
Viun11g01111 679 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 644 - -
Viun11g01111 679 SMART cnmp_10 482 611 IPR000595 -
Viun11g01111 679 CDD CAP_ED 482 588 IPR000595 -
Viun11g01111 679 Pfam Ion transport protein 80 399 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun11g01111 679 Gene3D Jelly Rolls 480 598 IPR014710 -
Viun11g01111 679 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Viun11g01111 679 Gene3D Helix hairpin bin 407 473 - -
Viun11g01111 679 MobiDBLite consensus disorder prediction 26 41 - -
Viun11g01111 679 FunFam cyclic nucleotide-gated ion channel 4 480 598 - -
Viun11g01111 679 Pfam Cyclic nucleotide-binding domain 503 590 IPR000595 -
Viun11g01111 679 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01111 Viun-Chr11 24046393 24058503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01111 66 678 Ion Channels AT5G54250 79.806 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01111 K05391 - gmx:100796761 1192.18