Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01088 ATGATAAAAATCGTACCAAAATCAATGGAGAGCTTCGAAATGTTTGGTGTGTGCCTTTTGTTCCTCTCTCTGTTATCCATGTCCTCCACTTTGGAGATGATTACTCCCACCCAACCCTTGAAAGATGGTACGAATGAGAATGTAACTCTTGTCTCCACAAACGGAACCTTTGAAGCAGGATTCTTCAGCCCTTCAAATTCCGGTAGCCGTTACCTTGGAATTTGGTACAAAACCATATCCCCAAGAACAGTTGTTTGGGTGGCCAACAAAGAAACACCACTTCAAGACCACTCCGGCGTCTTAGAACTAGACAGTGATCAAGGAATTCTTAGTATCAAAAGTGGCACAGGAGCCAAAATATGGTCCTCAAATGCATCACACACTCCAAGCAAACCAGTTGCTGTGGAGTTGTTGGAATCAGGAAACATGGTTGTGAAAGATGGCCACAATAACTTCTTATGGCAAAGCTTTGATTACCCAGATGATACTTTGCTTCCAGGAATGAAACTTGGAATAAACTTGAAAACTGGTCATTACCGAGCTTTAAGATCTTGGAAATCCCTCAACGATCCTACTCCAGGTGAATTTTCATTTGGTGTTGATACTCGTGGCCTTCCTCAACTAGTTATCACAAAGGATTCTAATGATGACATAGTTTATAGACCAGGCTCTTGGAATGGTGTTGGAGTCACAGGAGTACCTGGACAAAGAACTACTCATCCTTTAACAAAATCCCTTTTTGTTATGAATGAAGATGAAATCTTTTATGAGATTCAACTCTTGAATAGTTCAACTAAACTGAGAAGCAGATTGCTCCCAGAAGGGTATCAAATGCGTTTATTATGGTCAGATGAGAGTAAAAGTTGGGATCCTCTATACACTGGTTCATTTGATGAGTGTGAGAAATATGGTATGTGTGGTGCGAACACTATTTGCAATGTGAGTGGAGCACATCAACACTGTGAATGTTTGAGTGGATTCCGATCGAACGTTGCAGATTCAACTTGTGATCGAATTATACCTCTAGATTGCAACAAGGGAGATAGTTTTAAGAAGTACGAGGGAATGAAATTGCCAGACACATCTTCATCTTGGTATGATAAGAGAATGAGTCTTGATGAGTGCCAGAAATTGTGCTTGAGCAACTGCTCTTGTACTGCCTATGCTCAATTGGATATCAGTGCCAACGGAAGTGGCTGCTTGCAATGGTTTCATAACATTGTTGACTTCAGGATACTAGCACAGGATGGACAGGATTTTTATCTGCGAATTGGAGCTTCAAAATTCCAAGATCACGCCTTCAACAGGAAGATAGGAGGAATTATACTTGGTTGCACTATATTCATCATCGCCATTGTAGTATTTGGGTCCATATTTTGCCTCAACAGGAATAAACTCAAGCAAGCAGAAACAAATTACTGGAAGGACAAGAATAAGAAGGATGACATTGATTTACCAATATTCGACTTTTTATACATCTCCAATGCCACAAATAACTTTTCTGAAAGTAACAAATTGGGACAAGGGGGATTTGGACCGGTGTACAAGGGAATATTACCAGATGGGCAAGAAATTGCAGTTAAGAGGCTTTCTAAAACTTCGGGACAAGGTTTAGATGAGTTCAAGAATGAAGTATTGTTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTCAGCAAGATGAAAGACTGCTAATTTATGAATTCATGCCAAATAGAAGCTTGGATTACTTTATTTTTGATTCCGCAAGAAGTTCATCAATAGATTGGGCAAAGAGATTTGAAATTATTGATGGAATTGCTAGAGGACTTCTCTATCTTCATCAAGATTCTAGACTAAAAATCATTCATAGAGATCTCAAGACTTGTAATATTCTTCTTGACAACAATATGAAACCAAAAATATCAGATTTTGGTATGGCTAGGGCATTTAACCTAGATCAAGATGAAGCAAACACAAATAAAGTGATGGGAACATATGGTTATATGCCTCCCGAATATGCTGTGCATGGATCATTTTCAATTAAATCAGATGTATTTAGTTTTGGGGTAATTGTACTGGAGATAATCAGTGGAAGGAAGAATAGAGGATTTCGTGACCCACACAATGAGCTAAATCTTCTTGGACATGCATGGAGACTATGGATTGAAAAAAGGCCAATGGAACTAATGGATGAGTTAGTTGACACTGGAGATGGTCCATCTGAAATATTAAGATATATTCATATTGGTTTGTTGTGCGTACAACAGAGACCAGAGGATAGGCCAAACATGTCTTCAGTAGTTTTAATGTTGAATGGCGAAAAGTTATTGCCTGAGCCAAGTCAACCTGGATTTTACACGGGAAGAAATAACTTGACAACCATGACAGATTCTTCTTCAAGAAATGTGGATGTGTATTCTCTCAACGAAATGTCTGAGACATTGCTTGAGGCAAGATAA 2460 0.3886 MIKIVPKSMESFEMFGVCLLFLSLLSMSSTLEMITPTQPLKDGTNENVTLVSTNGTFEAGFFSPSNSGSRYLGIWYKTISPRTVVWVANKETPLQDHSGVLELDSDQGILSIKSGTGAKIWSSNASHTPSKPVAVELLESGNMVVKDGHNNFLWQSFDYPDDTLLPGMKLGINLKTGHYRALRSWKSLNDPTPGEFSFGVDTRGLPQLVITKDSNDDIVYRPGSWNGVGVTGVPGQRTTHPLTKSLFVMNEDEIFYEIQLLNSSTKLRSRLLPEGYQMRLLWSDESKSWDPLYTGSFDECEKYGMCGANTICNVSGAHQHCECLSGFRSNVADSTCDRIIPLDCNKGDSFKKYEGMKLPDTSSSWYDKRMSLDECQKLCLSNCSCTAYAQLDISANGSGCLQWFHNIVDFRILAQDGQDFYLRIGASKFQDHAFNRKIGGIILGCTIFIIAIVVFGSIFCLNRNKLKQAETNYWKDKNKKDDIDLPIFDFLYISNATNNFSESNKLGQGGFGPVYKGILPDGQEIAVKRLSKTSGQGLDEFKNEVLLIAKLQHRNLVKLLGCSIQQDERLLIYEFMPNRSLDYFIFDSARSSSIDWAKRFEIIDGIARGLLYLHQDSRLKIIHRDLKTCNILLDNNMKPKISDFGMARAFNLDQDEANTNKVMGTYGYMPPEYAVHGSFSIKSDVFSFGVIVLEIISGRKNRGFRDPHNELNLLGHAWRLWIEKRPMELMDELVDTGDGPSEILRYIHIGLLCVQQRPEDRPNMSSVVLMLNGEKLLPEPSQPGFYTGRNNLTTMTDSSSRNVDVYSLNEMSETLLEAR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01088 819 CDD STKc_IRAK 506 773 - -
Viun11g01088 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 758 - -
Viun11g01088 819 CDD B_lectin 37 160 IPR001480 -
Viun11g01088 819 SMART blect_4 41 160 IPR001480 -
Viun11g01088 819 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
Viun11g01088 819 Pfam Protein tyrosine and serine/threonine kinase 503 769 IPR001245 GO:0004672|GO:0006468
Viun11g01088 819 CDD PAN_AP_plant 341 424 - -
Viun11g01088 819 Gene3D - 27 157 IPR036426 -
Viun11g01088 819 PIRSF SRK 5 819 IPR024171 GO:0004674
Viun11g01088 819 SMART ntp_6 345 424 IPR003609 -
Viun11g01088 819 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01088 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 157 - -
Viun11g01088 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Viun11g01088 819 Gene3D Hepatocyte Growth Factor 341 422 - -
Viun11g01088 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 779 - -
Viun11g01088 819 Pfam D-mannose binding lectin 83 186 IPR001480 -
Viun11g01088 819 ProSiteProfiles Bulb-type lectin domain profile. 35 158 IPR001480 -
Viun11g01088 819 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Viun11g01088 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 191 IPR036426 -
Viun11g01088 819 SUPERFAMILY Protein kinase-like (PK-like) 485 807 IPR011009 -
Viun11g01088 819 ProSitePatterns EGF-like domain signature 2. 321 336 IPR000742 -
Viun11g01088 819 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Viun11g01088 819 SMART serkin_6 500 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01088 819 Pfam PAN-like domain 344 409 IPR003609 -
Viun11g01088 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 465 575 - -
Viun11g01088 819 Pfam S-locus glycoprotein domain 220 329 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01088 Viun-Chr11 23557490 23573026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01088 452 786 Receptor kinase-like Gene Family AT3G45860 56.560 1.13e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g01088 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01088 - - vum:124820888 1454.5