Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01049 ATGCCTTCTAAAGCCATCATGCAATGCAGCTCTTCTTCATCATCTCAAGTCACAAGAATATATGATGTGTTTGTGAGTTTCCGAGGTGAAGACACTCGAAACAACTTCACTGATTTTCTCTTCCAAGTTCTTCGTAGAAAAGGCTTCCATGCCTTCAAAGACGATGCAGATCTCAGGAAAGGTGAATCCATAGCACCGGAACTGCAACAAGCCATTGAAGGGTCTCGCATTTTCATCGTGGTCTTCTCTAAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTTGCACACATTTGCTATTTGGTTGAAACACCGGGAAGACATGTTCTACCTATTTTTTATGATGTGGATCCGTCAGATGTGCGAAAACAGAGTGGCTATTACGAGAAACCCTTTGTCGAATTCGAAGAAAGATTTAGAGAAGATAATGAAGGGATGGAGGAAGTGCAGAGATGGAGAGAAGCTCTCACACAAGTTGCCAATCTCAGTGGCTGGGACATTAGAAATAGGCCACAATATGCAGTGATTGAAGAAATTGTTCAAAAGGTGACAGATGTATTGGGTCATAAATTTTCTAGTCTTCCAAATGATAATCTAGTTGGGATGCAATTTCGTGTCGAGGAATTGGAAAAACTGTTATATATGGGGTCAAGTAATGATGTTAGAGTTTTTGGAATCAGTGGAATGGGTGGAGTAGGAAAGACTACTCTTGTTCGTGCTTTATACGAAAGAATCTGTCATCAATATGATTTTACTTGTTATATTGATGATGTGAACCAGATATATGGAGATTCTAGTACATTAGGTGTACAAAAGCAATTGCTTTCTTGTTCTCTAAATGAAAAATATGAAGAGATTTGCAATGTTTCTGAAGGAACTTATTTGATATGGAAAATGCTACAACGTAAAAAAACACTTATAGTTCTCGATAATGTTGATGAAGTTGAACAGCTAAAGATATTTACTGGGAATCGAGACACTATGTTACGTGATTGTCTTGGTAGAGGGAGCATAATCATCATAATTTCTAGGGATGAACAAATATTGAGGATACATGGAGTAGATGAGGTTCACCAAGTTCAACCACTAGAGAAAGAAGAGGCCGTTCAATTATTTTGTAGACATGCTTTCAAAGCTAATATTATTATGAGTGATTATGAAAAGATGACAAATGAGGTACTATGGCATGTTCAAGGTCATCCTTTAGCACTTGAAATATTGGGTTCAACATTATTTGGTCTAAGTGTATCACAATGGAGAAGTGCATTAGCTATGCTAAGAGAAAATAAAAGTAAAAAGATTATGGATGTGCTGAGAATAAGTTTTGAAGCGTTGGATTCTACAAACAAGGAAATATTTCTAGACATTTCTTGCTTTCTCCATAATTATGAAGTGGAAAATGCAGTAGAAATTCTAAAGTTTCGTGGATTTTATCCCGACTATGGCTTGAAAGTTCTCATAAATAAATCACTCTTGATCGTCAAGGATGGGAGACTTATAATGCATCGCCTGTTGATAGACTTGGGCCGGTCCATTGTTCGTGAAATATCACCTAAAGAGCCAAGAAACTGGAGCAGAGTGTGGAGCAGCAAGGATCTCCAAAAAATATTGTCAAATAACATGCCTTTACACAATTTGAAGCGTTTGGATCTCTCTTTTTCAGAAGACCTAATCAAGATGCCAGATTTAGGGGAGGCCATAAATCTTGAGTGGCTAAGTCTGAGAAGTTGTACAAAAATAAAGGAGATCCATCCATCCATTGGTCTTCGAAGAAAACTCTCTTATGTGACTTTGGAAGGCTGCGAAAATCTTATAAAGTTGCCACATTTTGAAGAGACCCAAAATCTTGAAATACTAGATCTTGAGAGCTGTATAAAACTGGAGAAGATCCATCCATCCATTGGTCATATAAGAAAACTGAAATTTTTGAACTTGAAAGACTGCGAAAGTCTTACCATGTTACCACATTTTAGAGAGGACCTAAATCTTGAAATTCTAAATCTCCAAGGATGTATGAAGCTGAGGCAGATCAATCCATCCATTCATCATCTAAAAAAACTCACTATTTTGAATATGGAAGGCTGCAAAAGGCTTGTGAGCTTGCCCTACACCATATTATGCCTCAATTCTCTCAGTTATCTGAATCTATCGGCCTGTTCAAATCTGTGTTATATCCAGTTTTTAGAAGAAGCAAGGGATGAAGGTCATTTGAAGAGGCCTTGTATAGGTGAAGCTTCTGTAAGATCATCCATCATGAAAAGGTGGTTTAAGTGGCCTTTACACTTGTTGCATTCAAGAAGACATAAAGATTCAGCTAGCCACTTTTTGCCTTCTCCCTATTTCTCATGCATGCGTGAACTTGATTTAAGTTTCTGCGCTTTACTTGAAATCCCTGATGTTGTTGGAAGTTTTCACAGATTAGAAAGGCTAAATTTAAGTGGAAACAGTTTTTCTAAACTACCAAGCCTGAAGGAGCTTTCCAAACTGTATCATTTAGTCTTAAGGCATTGCGAGCAACTGATATATTTGCCTGAGCTCCCTTCACATACTTACTTGCCATCAGTAATTTACAAACGACCATGGCCAACGACAGAAACTCCAGTATGGACAGACGGTCCACAAAAACAACCTGGACATTATATAAAGTCAGGTTTAGAAGTTTTGAACTGCCCAAAATTAGTTGAGATTGAGAGGGAACGCTGCACGAGAATGACTGTTTCATGGATGATACAAATACTTCAGGCGCAACGCCGCGTAGATCCGTTGTCCATGCCAATGAATCCAATGTTTTCAAGTGTTATTCCTGGAAGTGAAATACCAAGCTTTTTCAACCATCAGGAGGATAGCGGGATATCATGCATTGATGCATCTCGCTATGGGCATAACTATGTGGCTGCTTTGCTTTGTGTAGTATTCGGTGCTCAGTGCAGAAGGGGGATTGTGTCACCAATGTGTCCTTCAAAAGCAAGAGGAATATATAATGGCAGTAAGATTCAGATGGTTCTTCATGATGATCTAGCCATCATGGACGAATTTTCAGATTGCATGTGGATAGCCTTTTTTAATGAACATGAATTCAATCGATGTCAGTACTCATGGTTCTATGATAAAATATTAGCCATAATCGGGAATGACTTTGATATTAATGTGAAGAAATGGGGGTATCGTCTGATATATGATCTGGATCTAGAGTTATCAACCTTAGCAATGATGCATGGTGGAAATTCGTCGGCCTTGAAGAACGAACTTTTGGCAATTGAAGAAAACAAGTAA 3276 0.3834 MPSKAIMQCSSSSSSQVTRIYDVFVSFRGEDTRNNFTDFLFQVLRRKGFHAFKDDADLRKGESIAPELQQAIEGSRIFIVVFSKNYASSTWCLRELAHICYLVETPGRHVLPIFYDVDPSDVRKQSGYYEKPFVEFEERFREDNEGMEEVQRWREALTQVANLSGWDIRNRPQYAVIEEIVQKVTDVLGHKFSSLPNDNLVGMQFRVEELEKLLYMGSSNDVRVFGISGMGGVGKTTLVRALYERICHQYDFTCYIDDVNQIYGDSSTLGVQKQLLSCSLNEKYEEICNVSEGTYLIWKMLQRKKTLIVLDNVDEVEQLKIFTGNRDTMLRDCLGRGSIIIIISRDEQILRIHGVDEVHQVQPLEKEEAVQLFCRHAFKANIIMSDYEKMTNEVLWHVQGHPLALEILGSTLFGLSVSQWRSALAMLRENKSKKIMDVLRISFEALDSTNKEIFLDISCFLHNYEVENAVEILKFRGFYPDYGLKVLINKSLLIVKDGRLIMHRLLIDLGRSIVREISPKEPRNWSRVWSSKDLQKILSNNMPLHNLKRLDLSFSEDLIKMPDLGEAINLEWLSLRSCTKIKEIHPSIGLRRKLSYVTLEGCENLIKLPHFEETQNLEILDLESCIKLEKIHPSIGHIRKLKFLNLKDCESLTMLPHFREDLNLEILNLQGCMKLRQINPSIHHLKKLTILNMEGCKRLVSLPYTILCLNSLSYLNLSACSNLCYIQFLEEARDEGHLKRPCIGEASVRSSIMKRWFKWPLHLLHSRRHKDSASHFLPSPYFSCMRELDLSFCALLEIPDVVGSFHRLERLNLSGNSFSKLPSLKELSKLYHLVLRHCEQLIYLPELPSHTYLPSVIYKRPWPTTETPVWTDGPQKQPGHYIKSGLEVLNCPKLVEIERERCTRMTVSWMIQILQAQRRVDPLSMPMNPMFSSVIPGSEIPSFFNHQEDSGISCIDASRYGHNYVAALLCVVFGAQCRRGIVSPMCPSKARGIYNGSKIQMVLHDDLAIMDEFSDCMWIAFFNEHEFNRCQYSWFYDKILAIIGNDFDINVKKWGYRLIYDLDLELSTLAMMHGGNSSALKNELLAIEENK 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01049 1091 Gene3D - 15 191 IPR035897 -
Viun11g01049 1091 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Viun11g01049 1091 Pfam TIR domain 21 194 IPR000157 GO:0007165
Viun11g01049 1091 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 166 IPR035897 -
Viun11g01049 1091 PRINTS Disease resistance protein signature 224 239 - -
Viun11g01049 1091 PRINTS Disease resistance protein signature 636 652 - -
Viun11g01049 1091 PRINTS Disease resistance protein signature 398 412 - -
Viun11g01049 1091 PRINTS Disease resistance protein signature 300 314 - -
Viun11g01049 1091 Gene3D Ribonuclease Inhibitor 661 734 IPR032675 -
Viun11g01049 1091 Gene3D Ribonuclease Inhibitor 519 660 IPR032675 -
Viun11g01049 1091 Gene3D Ribonuclease Inhibitor 767 909 IPR032675 -
Viun11g01049 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 457 IPR027417 -
Viun11g01049 1091 ProSiteProfiles Leucine-rich repeat profile. 807 828 IPR001611 GO:0005515
Viun11g01049 1091 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 718 IPR044974 GO:0006952
Viun11g01049 1091 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 190 - -
Viun11g01049 1091 Gene3D - 192 357 IPR027417 -
Viun11g01049 1091 Pfam NB-ARC domain 207 433 IPR002182 GO:0043531
Viun11g01049 1091 Gene3D - 363 447 IPR042197 -
Viun11g01049 1091 SMART till_3 20 163 IPR000157 GO:0007165
Viun11g01049 1091 SUPERFAMILY L domain-like 515 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01049 Viun-Chr11 22637597 22646194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01049 18 855 WRKY Transcription Factor Family AT4G12020 27.336 2.71e-62 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01049 - - vra:106756186 1571.6