Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01034 ATGGGAATTCAAAAACATATGGTTAACGTAAAGGCTAGCTTAGGTGTTCTTTTAGTTCTTCTTCTTGTAGCAGCAGTCAGTCCTTTGGAGAAGAAGGAAACAGAAGATGATTTTGTTAGAAAGTTACTTGATCCAGCATACGGGTTGTTCGATGAACACACGGCAAAAGTCTTATGGAAATATTGCAGGGAAGATTTATTTCATTTAGTGAAAGATGTTGGGAATCATGATTTGTGTCTTTCAAGGGAATTATCTGGCGGCACCAATATAATCAGCTCAGAGATTCAACCCTTAGCACGAGAAGAGACCAAAAATTTTATCAATGCTTACTGTTCTGAATTCAAGGAGGACATTCTTCACTGTTTGAGAAAAGATAATCCCCCATTACCTGTTTCAGGAAAAGAAGATGATTCCGATATTTGGCATGTCGCTTATATGGGACCACCTTTTTCCAGATCCAGTGCTCCTACAAGAAATTTTGGTCGTATTTTGCTTCAGCGCATATCAGACCCACCTAGTCCAGGCCCTGCACCTAGTTTAACACCATTTCCTGAACCCAGTTCAGCACCATCTTCTGAACCCAGTCCAGCACCATCATCTGATCCCAGTCCAGTACCATCACCTCATTCTCCAGTACATCATCTTCCTGGACCACTGCAACCTTCTTCTGCACCATCTTTTTTTCCAAAATTGACGCCACCAGCAGCTTCAGATATTTCTGCTCCTCCATCTTCGGAAACTGACAAACAGGAAGATAGTCACAGTAATAAGAAAACAGTTGTTCTTGCGGTAGTTATAACTGCAGTAGTGACATTTATAGCTGCATCACTGCTCTTTTTATGCTGGAGGCGGCATCGTAGGACTGGCCATGTTAGACTAAATGATGATAGGCCTCTTCTCAGCTTGAGCATGAGTGATTACTCTGTTGGTCCTTCCAGTTTCTCTTTTGGGAATTCGATGAAAGTGCAGAAACCTGGGTTTCAGTCATCTAATAATAGCTTAGTAGACAATAAGTACACAGTGCAAGAAAGTCAATCAATAGGAGCTCATAATGCTGCCACAGGGTCACCATTTGAACTGAAACCTCCTCCCGGGAGGATGGGAATCATTCCTTCTGGAATGCCTCCCCTAAAACCTCCTCCAGGAAGATTAAACCCTCTTCCTCCTGAGCCACCTTCATTTAGGCCTTCGGATGCTGCTGCTCCTCCAGCATCTACCACTACTGTTGCTGTTATTAGTAGTATTCCACCACCTCAACCACCAATGGGTGCCAAACCTAGCCCACCTCTACCACCACCTCCAGCACTAGCTGGTTCCAGACCAGGTCCTCCTCCACCACCTCCAGCACTAGCTGTTTCCATACCTGGTCCTCCTCTTCCACCACCCCCGGCACCAGCCGGTATCAAACCTGGTCCTCCTCCTCCACCACCCCCGGCACCAGGTGGTGCCAAACCTGGTCCTCGGCCACCACCACCACCTCCTGTGAATGGTGTAGCTCCTCCTCGACCTCCTCCATTTGGCTCAAAGGTGCCCCGGCCTTTGGCTAGTGGATCAAAGGCTAACGTTGCAAGTGAAGCTGATGCTCCCAAAGCCAAGCTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCATTCCAGTTTAATGAAGAAATGATAGAGACGCTTTTTGGCTATAATACTGTGGATAAGAACAATGGTCAAAGACAGAAAGAGTCTTCCTCTCAAGACCCTTCACCTCAGTTTGTCCATATCATTGACAAAAAGAAAGCGCAAAATTTATTGATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTCGTGATGCACTTTGTGAAGGACATGAGCTACCCCCAGAATTCCTTCAAACTTTGCTAAAGATGGCACCAACATCAGATGAAGAACTTAAGCTCAGACTTTTTGATGGTGATCTATCTCAACTTAGCCCTGCTGACAGTTTCCTCAAAACCCTGGTTGACATTCCATTTGCATTCAAAAGAATGGAAGCTCTGCTTTTCATGGGCTCATTTAAAGAGGAGCTTGGAACTACTATGGAGTCTTTTTCCATTTTGGAGGTTGCTTGTAAGGAACTAAGAAGTAGCCGGCTGTTTCTGAAGCTTCTTGAAGCTGTTCTGAAAACTGGCAACCGAATGAATGATGGAACTTTCCGTGGTGGTGCTCAAGCATTTAAACTTGATACACTTCTGAAACTATCCGATGTAAAAGGAACAGATGGGAAAACTACTCTCTTACACTTTGTTGTTCTAGAGATTATCCGTTCTGAGGGCATAAAAGCTGTCAGAAAGTCCAAAGATAGCCAGAGTTTATCTAGTATTAAATCAGATGACCTTCAGGATAATATTCAAGAAACAGAAGATCACTACCATGAAATTGGCCTTCAGGTGGTTTCACACTTAAGCAGTGAACTTGAGAATGTAAAGAAAGCAGCAGTTATAGATGCTGACAGCTTAACAGGAACCACTGTCAAACTCGGCGAAGGTCTCGTAAACACACGAGACTTGATAAACAAAAACATGAAGAATGTGGAGGAAGATAGGGGGTTTTGTGAGACGGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTAAGAAACTGCTGGAAGAGGAGAAAAAGATCATGGCTTTGGTGAAGAACACTGGTGATTACTTTCATGGGAATGCTGGGAAGAATGAAGGCTTAAGGCTGTTCATAGTAGTACGAGACTTCTTACTAATGCTGGATAAAATATGCAAGGAGTTGATAGACACACAGAAGAAGCTAACAAAAACAGTAAAACAAGTAAAACAAGAACCGTCTTCCTCCGAAGCACGTCCACCACCTGATCTTCGACAGCGGCTCTTTCCAGCAATTGCTGAAAGGAGGATGATTGACAGTAGTTCAGATGATGAGAGTCCATAG 2964 0.4383 MGIQKHMVNVKASLGVLLVLLLVAAVSPLEKKETEDDFVRKLLDPAYGLFDEHTAKVLWKYCREDLFHLVKDVGNHDLCLSRELSGGTNIISSEIQPLAREETKNFINAYCSEFKEDILHCLRKDNPPLPVSGKEDDSDIWHVAYMGPPFSRSSAPTRNFGRILLQRISDPPSPGPAPSLTPFPEPSSAPSSEPSPAPSSDPSPVPSPHSPVHHLPGPLQPSSAPSFFPKLTPPAASDISAPPSSETDKQEDSHSNKKTVVLAVVITAVVTFIAASLLFLCWRRHRRTGHVRLNDDRPLLSLSMSDYSVGPSSFSFGNSMKVQKPGFQSSNNSLVDNKYTVQESQSIGAHNAATGSPFELKPPPGRMGIIPSGMPPLKPPPGRLNPLPPEPPSFRPSDAAAPPASTTTVAVISSIPPPQPPMGAKPSPPLPPPPALAGSRPGPPPPPPALAVSIPGPPLPPPPAPAGIKPGPPPPPPPAPGGAKPGPRPPPPPPVNGVAPPRPPPFGSKVPRPLASGSKANVASEADAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNTVDKNNGQRQKESSSQDPSPQFVHIIDKKKAQNLLILLRALNVTMEEVRDALCEGHELPPEFLQTLLKMAPTSDEELKLRLFDGDLSQLSPADSFLKTLVDIPFAFKRMEALLFMGSFKEELGTTMESFSILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAVRKSKDSQSLSSIKSDDLQDNIQETEDHYHEIGLQVVSHLSSELENVKKAAVIDADSLTGTTVKLGEGLVNTRDLINKNMKNVEEDRGFCETVKSFVQNAEADVKKLLEEEKKIMALVKNTGDYFHGNAGKNEGLRLFIVVRDFLLMLDKICKELIDTQKKLTKTVKQVKQEPSSSEARPPPDLRQRLFPAIAERRMIDSSSDDESP 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01034 987 SMART it6_source 523 943 IPR015425 -
Viun11g01034 987 MobiDBLite consensus disorder prediction 171 215 - -
Viun11g01034 987 Pfam Formin Homology 2 Domain 525 928 IPR015425 -
Viun11g01034 987 Coils Coil 877 897 - -
Viun11g01034 987 PANTHER FORMIN-RELATED 167 976 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Viun11g01034 987 SUPERFAMILY Formin homology 2 domain (FH2 domain) 593 951 - -
Viun11g01034 987 MobiDBLite consensus disorder prediction 166 256 - -
Viun11g01034 987 MobiDBLite consensus disorder prediction 414 510 - -
Viun11g01034 987 MobiDBLite consensus disorder prediction 349 528 - -
Viun11g01034 987 Coils Coil 932 952 - -
Viun11g01034 987 ProSiteProfiles Formin homology-2 (FH2) domain profile. 523 954 IPR015425 -
Viun11g01034 987 MobiDBLite consensus disorder prediction 368 398 - -
Viun11g01034 987 Gene3D Formin, FH2 domain 528 961 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01034 Viun-Chr11 21838417 21845717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01034 477 977 FH2 protein (formin) Gene Family AT5G54650 60.355 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01034 - - gmx:100793413 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01034 11 21838417 21845717 Viun11g01034 11 21838417 21845717 ECH
Viun5g02764 5 39174454 39178752 Viun11g01034 11 21838417 21845717 PCT