Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01029 ATGAGAGAGGAGTCAATAGGGCTGATTATTGGGGTTTCCATAGGAGTGGTTATTGGACTAGTTTTGGCAATTTTTGCATTCTTCTGCCATAGGTATCATCGAAAGCGTTCTCAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATTCTAATCCGCACACATGGTGCTGATTCTTGCACCATACTATCAGACTCAACCTTAGGTCCAGAATCACCCATAAAGTCTGGAAGGTATGGCCTACCCTTCTGGCTTGAGGGGTTTAAGAAGAGTAGTAACATGGTCCCAGCATCTGGTTTACCTGAATATGCATACAAGGATTTGCAGAAAGCAACACATAATTTTACAACGGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTGTACCGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTCATGTTGTTGGGAAGATTACACCACAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTATACATGAGTAATGGTAGCTTGGCATCCCACTTGTATGGTAGTGATGTGAATGAAGCCCTGTGCTGGGATTTGAGGGTCAACATAGCTTTAGATGTGGCAAGAGGCTTGGAGTATCTTCATGATGGTGCAGTTCCTCCTGTAATCCATCGAGACATCAAATCTTCCAATATTCTGTTGGATCAATCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGGGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGCACCTTTGGGTATCTTGACCCTGAGTATATATCTTCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGAGTGTTGCTCTTTGAAATTATAGCTGGCAGAAATCCTCAGCAGGGTCTTATGGAATATATTGAGCTTGCAGCAATGAACATCGAGGGAAAAGTTGGGTGGGAAGAGATTGTGGATTCTCACCTTCAAGGAAACTTTGATGTGAAGGAACTGAATGAAGTTGCAGCAGTAGCTTACAAATGCATCAACCGTGCCCCAAATAAACGTCCTTCTATGAGGGACATTGTGCAAGTGCTAACAAGGATCCTTAAATCAAGGCACCATGGGAATCATCACAACAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATCCTGATCAGCTAGAGACCGTGATTTCAGTCACTGACCACAGGAGAGAAGAATCTAAGGATAATCCTGCGACAGAGGTGTTTGAGGACTAG 1296 0.4306 MREESIGLIIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATILIRTHGADSCTILSDSTLGPESPIKSGRYGLPFWLEGFKKSSNMVPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMCTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSNGSLASHLYGSDVNEALCWDLRVNIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYIELAAMNIEGKVGWEEIVDSHLQGNFDVKELNEVAAVAYKCINRAPNKRPSMRDIVQVLTRILKSRHHGNHHNNSLSATDEVFIDPDQLETVISVTDHRREESKDNPATEVFED 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01029 431 Gene3D Transferase(Phosphotransferase) domain 1 189 401 - -
Viun11g01029 431 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 397 - -
Viun11g01029 431 PANTHER OS01G0750732 PROTEIN 5 389 - -
Viun11g01029 431 SUPERFAMILY Protein kinase-like (PK-like) 101 391 IPR011009 -
Viun11g01029 431 SMART serkin_6 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01029 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Viun11g01029 431 Pfam Protein tyrosine and serine/threonine kinase 115 376 IPR001245 GO:0004672|GO:0006468
Viun11g01029 431 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Viun11g01029 431 CDD STKc_IRAK 119 379 - -
Viun11g01029 431 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Viun11g01029 431 ProSiteProfiles Protein kinase domain profile. 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01029 Viun-Chr11 21769485 21773405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01029 103 430 Glycoside Hydrolase AT3G07070 41.570 1.72e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Viun11g01029 PK_Tyr_Ser-Thr 7.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01029 - - gmx:100785634 764.222