Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01027 ATGAGAGAGGAGTCAATAGGGCTGATTATTGGGGTTTCCATAGGAGTGGTTATTGGACTAGTTTTGGCAATTTTTGCATTCTTCTGCCATAGGTATCATCGAAAGCGTTCTCAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATTCTAATCCGCACACATGGTGCTGATTCTTGCACCATACTATCAGACTCAACCTTAGGTCCAGAATCACCCATAAAGTCTGGAAGGTATGGCCTACCCTTCTGGCTTGAGGGGTTTAAGAAGAGTAGTAACATGGTCCCAGCATCTGGTTTACCTGAATATGCATACAAGGATTTGCAGAAAGCAACACATAATTTTACAACGGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTGTACCGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTCATGTTGTTGGGAAGATTACACCACAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTATACATGAGTAATGGTAGCTTGGCATCCCACTTGTATGGTGATGTGAATGAAGCCCTGTGCTGGGATTTGAGGGTCAACATAGCTTTAGATGTGGCAAGAGGCTTGGAGTATCTTCATGATGGTGCAGTTCCTCCTGTAATCCATCGAGACATCAAATCTTCCAATATTCTGTTGGATCAATCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGGGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGCACCTTTGGGTATCTTGACCCTGAGTATATATCTTCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGAGTGTTGCTCTTTGAAATTATAGCTGGCAGAAATCCTCAGCAGGGTCTTATGGAATATATTGAGCTTGCAGCAATGAACATCGAGGGAAAAGTTGGGTGGGAAGAGATTGTGGATTCTCACCTTCAAGGAAACTTTGATGTGAAGGAACTGAATGAAGTTGCAGCAGTAGCTTACAAATGCATCAACCGTGCCCCAAATAAACGTCCTTCTATGAGGGACATTGTGCAAGTGCTAACAAGGATCCTTAAATCAAGGCACCATGGGAATCATCACAACAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATCCTGATCAGCTAGAGACCGTGATTTCAGTCACTGACCACAGGAGAGAAGAATCTAAGGATAATCCTGCGACAGAGGTGTTTGAGGACTAG 1293 0.4308 MREESIGLIIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATILIRTHGADSCTILSDSTLGPESPIKSGRYGLPFWLEGFKKSSNMVPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMCTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSNGSLASHLYGDVNEALCWDLRVNIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYIELAAMNIEGKVGWEEIVDSHLQGNFDVKELNEVAAVAYKCINRAPNKRPSMRDIVQVLTRILKSRHHGNHHNNSLSATDEVFIDPDQLETVISVTDHRREESKDNPATEVFED 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01027 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Viun11g01027 430 Gene3D Transferase(Phosphotransferase) domain 1 189 400 - -
Viun11g01027 430 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01027 430 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01027 430 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Viun11g01027 430 CDD STKc_IRAK 119 378 - -
Viun11g01027 430 SUPERFAMILY Protein kinase-like (PK-like) 91 375 IPR011009 -
Viun11g01027 430 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Viun11g01027 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 396 - -
Viun11g01027 430 PANTHER OS01G0750732 PROTEIN 5 388 - -
Viun11g01027 430 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01027 Viun-Chr11 21768136 21773405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01027 103 429 Glycoside Hydrolase AT3G07070 41.570 3.73e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Viun11g01027 PK_Tyr_Ser-Thr 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01027 - - gmx:100785634 767.303