Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01023 ATGGCACCTGATGGTGATGATCAAGTCACCACATCAAGCACTTCGTCTTTTGGTGTTAGCAGAAGGCCTACAACATCTGGGCAGAGAAATAGGTCCTGGAGCCATGAGGGTCAGCCAAATGATGTTGCACGAGTGGGTAAGCGTCACAAATCAACTGAGGAAGTATCACTACAAGGATTTCCATCAACCCATTTGAAAGAATTGCTGATTGTGTCAGCCAAAGCCTTGTCTGAAAACAAGATGAAAGATTTTGATCAATTGATAGAGAAGGCTAGAAGTGTTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTCGGTGCTTATTTGGTGGAAGGGCTTGTTGCAAGGAAGGAGGCATCGGGGAATAACATCTACCGTGCACTCAGATGCAGAGAACCTGAAGGAAAAGACTTGCTCTCTTACATTCAGCTACTGTATGAAATATGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGCGCCATTGCTGAAGCTTGTAGAGATGAGGACCACATTCATATCATAGACTTTCAGATTGGTCAAGGAATTCAATGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGTGGAGCTCCCCATGTGCGGATCACAGGGATTGATGACCCCCTTTCTAAATATGTCCGTGGTGATGGATTAGAAGCCGTTGGAAAAAGGTTGGCTGAAATATCTCAGACATTTAACATCCCAGTTGAGTTCCACAGTGTGCCTGTTTTAGCTCCATATGTGACAAAAGACATGCTTGACATTAGACCTGGTGAGGCTTTGGCTGTGAATTTCCCTTTGCAACTCCATCACACGGCTGATGAGAGTGTCGACATGAGTAATCCAAGGGATGGACTTTTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACGTTGATTGAGCAAGAGTCAAACACTAATACCACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAATTTTTGAGTCCATTGATGTGTCTCTTGCAAGAAAGAGCAAGGATCGGATTAATGTAGAACAACATTGTCTGGCACGGGATATTGTCAATATTGTTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAACTGTTAGGCAAGTGGAAGTCTAGGTTCACAATGGCTGGCTTTTCTCAATATCCTTTGAGTTCATACGTTAATTCTGTCATAAGGAGCCTGCTTAGGTGCTACTCAGAACATTATAATCTTGTGGAGAAGGATGGGGCCATGTTGTTGGGATGGAAGGACAGAAATTTGATTTCAGCTTCAGCATGGCACTGA 1308 0.4388 MAPDGDDQVTTSSTSSFGVSRRPTTSGQRNRSWSHEGQPNDVARVGKRHKSTEEVSLQGFPSTHLKELLIVSAKALSENKMKDFDQLIEKARSVVSITGEPIQRLGAYLVEGLVARKEASGNNIYRALRCREPEGKDLLSYIQLLYEICPYLKFGYMAANGAIAEACRDEDHIHIIDFQIGQGIQWMTLLQALAARPGGAPHVRITGIDDPLSKYVRGDGLEAVGKRLAEISQTFNIPVEFHSVPVLAPYVTKDMLDIRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLIEQESNTNTTPFFNRFIETLDYYLAIFESIDVSLARKSKDRINVEQHCLARDIVNIVACEGKERVERHELLGKWKSRFTMAGFSQYPLSSYVNSVIRSLLRCYSEHYNLVEKDGAMLLGWKDRNLISASAWH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01023 435 MobiDBLite consensus disorder prediction 1 37 - -
Viun11g01023 435 Pfam GRAS domain family 65 434 IPR005202 -
Viun11g01023 435 ProSiteProfiles GRAS family profile. 56 435 IPR005202 -
Viun11g01023 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 431 IPR005202 -
Viun11g01023 435 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01023 Viun-Chr11 21666751 21669880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01023 56 434 GRAS Transcription Factor Family AT5G48150 62.632 3.62e-174 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun11g01023 GRAS 3.1e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01023 - - gmx:100775665 782.711