Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00999 ATGGCGACGAGGGCAGCAGTGGCGGCGCCACGCGTTTTGCGACGCTTTTTCTGCTCAAACTCTGCTTCTTCTACTTTCCCTTTCGTTCCTACGCCGCCTGCGGGCGCTGTCCCCACTCCCGCACGGCCCACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGGGCTTAGCAAACGGACTACAACAGAAAAGCTTCGGGAAGAGTTTTCAAAGTTTGGTGAAGTCGTTCATGCTAGGGTGGTAACTGATCGAGTCTCAGGCTACTCTAAGGGTTTTGGTTTTGTGCAATATGCAACAATAGAAGAGGCTGGAAAGGGCATTGAAGGAATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAATATGCGCGACCAAGACCACCTCCAGGACATCTAAATAACAACAGTCCTCCTTTTGGCCGGCAGTGA 435 0.5172 MATRAAVAAPRVLRRFFCSNSASSTFPFVPTPPAGAVPTPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAGKGIEGMDGKFLDGWVIFAEYARPRPPPGHLNNNSPPFGRQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00999 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Viun11g00999 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Viun11g00999 144 SMART rrm1_1 50 123 IPR000504 GO:0003723
Viun11g00999 144 Gene3D - 30 134 IPR012677 -
Viun11g00999 144 PANTHER NUCLEOLAR PROTEIN 8 20 134 - -
Viun11g00999 144 FunFam RNA recognition motif-containing protein 28 139 - -
Viun11g00999 144 SUPERFAMILY RNA-binding domain, RBD 40 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00999 Viun-Chr11 20738998 20744220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00999 48 129 Eukaryotic Initiation Factors Gene Family AT4G34110 31.707 1.70e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00999 - - gmx:100789351 234.958