Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00988 ATGGGGATGTTTTCTTTCATGATTATTGTTGCTTACATGCTTGTTCCTGCTCTCAAAATTTCCGCAGCTAACCTCACTATGTCACAGTCAATAATTGACAGCGAGACATTAGTATCCAACAGCGGACAGTTTGAGCTCGGGTTCTTCACCCCAGGTAACTCCACAAAACGCTACCTTGGAATTTGGTATAAAATTATACCTGTTGAACGAGTTGTTTGGGTTCCATACGGCGCAAACGCAATTAATGATTCCTCGGGCATTTTAGCCTTCAGCAAGACAGGGAATCTTGAGCTCAGACAAAACGACACAGTTGTCTGGTCCGCAACCTATCGAAAACAAGCACGGAATCCAGTGGCAGTGCTCTTGGACAGTGGCAATTTTGTGGTAAGAAATGAGGGAGAAACAGAGCCAGATGAGTATCTGTGGCAAAGCTTTGACTATCCTTCTGATACACTCTTGCCAGGGATGAAGTTAGGATGGGACCTCAGAACTGGTCTGGAACGGAACCTAACATCTTGGAAGAGTCCGGATGATCCATCCCCAGGAGACGATTCTTGGGTTCTAAGGCTTAATAATTATCCTGAGTTTTACCTGATGCAGGGAAAACATAAGTCCAACCGCATTGGACCTTGGAATGGACTTTTTTTCAGTGGTCTATCACTTCAAAAGCCAAATCCAATCTACAAATTCGAGTACGTCGTTAAAAGTGACGTTTTGTACGCCCCCAACAAGGTTGAGATGTCGTATTCGCTTGTTCTTAAGAATACTTCGGTCCTCGTTGCAGTTACCATAAGCAAAGGTCGCTTCCGAACCCGTCGTTGGGTGGAAACTGCGCAAAGTTGGGAAACTTATGATGAATCTAACCTAAATGACATTTGTGATATGTATGCCTTGTGTGGAGCCTACGGGAATTGCTTGACAACAGCGTCACCACTTTGCCTATGTTTAAAAGGATTCAGTCCAAACTCACGACAAGAATGGAATACAATGGACTGGAGTGGAGGATGCATCCGGAAGAAACCATTAAGCTGCAAAGAGTTCTACAAGGATGAGTTTGTGAAATATGTAGGCCTGAAAGTACCAGATACGACACATACGTGGGTTGATGAGAATATTGATTTAGATGATTGCAGAAGCAGATGCTTGAGTAATTGTTCTTGTATGGCGTTTACTAATTCAGACATAAACGGGCCAGGTAGTGGCTGTGTCATGTGGTTTGGAGATCTTGTTGATATGCGGCAGTTTGAAACTGGTGGGCAAGATCTATATATCCGGATGTCTTCTGCAAATTCAGATCTCACCACAAACACTCGGGCTCAACAACGACACAAACGTGTGAAGATAATTATTGCTACCACAACTGCTGCAATTAGTGGCATACTTTTCTTTTGCATTTTTGTCATGTACAGAGTCCGAAGGAACATAGCAGAAAAGTCAGAGAAAAAAGACAACATTAAAAGGCAGCTAGAAGATCTAGACATGCCATTGTTTGATCTGTTTACAATCACTACTGCCACTAACAATTTCTCGAGCAATAATATGATAGGAAAAGGTGGTTTTGGACCTGTATACAAGGGAAAATTAGCGGATGGGCAAGAGATTGCTGTGAAAAGACTTTCAAGAAGTTCTGGACAAGGAATGACCGAGTTCATAACAGAAGTGAAACTGATTGCAAAGGTTCAACACCGTAATCTGGTAAAGCTACTTGGCTGTTGCATCCGAGGAGAAGAAAAAATACTAGTATATGAATACATGGTTAATGGAAGCCTAGATTCCTTCATCTTTGATGAACAAAAAGGTAAATTTCTTGATTGGCCTATGCGCTTCCAAATAATACTTGGAGTTGCAAGAGGGCTTCTGTATCTTCACCAAGATTCCCGGTTAAGGATAATACATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATGAAAATTTAAATCCAAAAATTTCAGACTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACCGAAGGAAACACAAACAGAGTAGTTGGGACATTTGGGTATATGGCCCCAGAGTATGCCGTTCATGGACTATTTTCAATCAAATCTGATGTTTTCAGCTTTGGTATTTTGTTGTTGGAGATTGTATGTGGGAACAAAAATAGACCTCTGTGTCATGGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGGAACTTTGGAAAGAGAAAAATGCCTTAGATTTGATAGACTCAAATGTGAAGGACTCGTGTGTAATCACAGAAGCATTGCGATGCATCCATATCAGTCTCTTGTGCGTGCAACAGTACCCGGAAGATAGGCCAACCATGACATCCATAATTCAAATGTTAGGCAGTGAGAGGGAACTGGTTGAGCCTAAAGAGCCTGGTTTCTTTCCAAAGAGAATTTCAAATGATGAAAATCTAAACAAAATGTCTATGAATGAAGAATTAAGCATTACGTCTTTAAATGGCCGGTGA 2469 0.4143 MGMFSFMIIVAYMLVPALKISAANLTMSQSIIDSETLVSNSGQFELGFFTPGNSTKRYLGIWYKIIPVERVVWVPYGANAINDSSGILAFSKTGNLELRQNDTVVWSATYRKQARNPVAVLLDSGNFVVRNEGETEPDEYLWQSFDYPSDTLLPGMKLGWDLRTGLERNLTSWKSPDDPSPGDDSWVLRLNNYPEFYLMQGKHKSNRIGPWNGLFFSGLSLQKPNPIYKFEYVVKSDVLYAPNKVEMSYSLVLKNTSVLVAVTISKGRFRTRRWVETAQSWETYDESNLNDICDMYALCGAYGNCLTTASPLCLCLKGFSPNSRQEWNTMDWSGGCIRKKPLSCKEFYKDEFVKYVGLKVPDTTHTWVDENIDLDDCRSRCLSNCSCMAFTNSDINGPGSGCVMWFGDLVDMRQFETGGQDLYIRMSSANSDLTTNTRAQQRHKRVKIIIATTTAAISGILFFCIFVMYRVRRNIAEKSEKKDNIKRQLEDLDMPLFDLFTITTATNNFSSNNMIGKGGFGPVYKGKLADGQEIAVKRLSRSSGQGMTEFITEVKLIAKVQHRNLVKLLGCCIRGEEKILVYEYMVNGSLDSFIFDEQKGKFLDWPMRFQIILGVARGLLYLHQDSRLRIIHRDLKASNVLLDENLNPKISDFGMARAFGGDQTEGNTNRVVGTFGYMAPEYAVHGLFSIKSDVFSFGILLLEIVCGNKNRPLCHGNQTLNLVGYAWELWKEKNALDLIDSNVKDSCVITEALRCIHISLLCVQQYPEDRPTMTSIIQMLGSERELVEPKEPGFFPKRISNDENLNKMSMNEELSITSLNGR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00988 822 Pfam D-mannose binding lectin 71 174 IPR001480 -
Viun11g00988 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Viun11g00988 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 584 - -
Viun11g00988 822 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Viun11g00988 822 CDD STKc_IRAK 515 780 - -
Viun11g00988 822 SMART ntp_6 347 426 IPR003609 -
Viun11g00988 822 SUPERFAMILY Protein kinase-like (PK-like) 489 780 IPR011009 -
Viun11g00988 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 145 - -
Viun11g00988 822 Gene3D Transferase(Phosphotransferase) domain 1 585 791 - -
Viun11g00988 822 Pfam PAN-like domain 349 412 IPR003609 -
Viun11g00988 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Viun11g00988 822 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Viun11g00988 822 CDD B_lectin 28 148 IPR001480 -
Viun11g00988 822 Pfam Protein tyrosine and serine/threonine kinase 512 780 IPR001245 GO:0004672|GO:0006468
Viun11g00988 822 Pfam S-locus glycoprotein domain 207 322 IPR000858 GO:0048544
Viun11g00988 822 SMART blect_4 28 148 IPR001480 -
Viun11g00988 822 SMART serkin_6 509 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00988 822 Gene3D - 18 145 IPR036426 -
Viun11g00988 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 179 IPR036426 -
Viun11g00988 822 ProSiteProfiles Protein kinase domain profile. 509 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00988 822 Gene3D Phosphorylase Kinase; domain 1 469 584 - -
Viun11g00988 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Viun11g00988 822 CDD PAN_AP_plant 341 425 - -
Viun11g00988 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00988 Viun-Chr11 20121001 20124446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00988 448 797 Receptor kinase-like Gene Family AT4G23190 51.821 5.88e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00988 PK_Tyr_Ser-Thr 5.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00988 - - gmx:100812007 1218.76