Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00972 ATGGACATTCGTCTTTTCATACTTATTGTTGCATGCACACTTGTCCCTTCTCTCAAAGCTTCCACAGCAATTAGTTCTATCCAAGTGTCCCAAATCATGAGAGATGGGGAGACTTTAGTATCAAATGGTGGAAGATATGAACTTGGGTTTTTCAGCCCAGGCAATTCCCAGAAACGTTACCTGGGCCTTTGGTACAAGAATATCCCAGTGAAGAAAATCCTTTGGGTTGCTAATAGGGCCAACCCCATCAATGATTTCTCGGGTATCTTAACACTCAACACCACTGGCAATCTTCTTCTCACCCAAAATGGGTCTCTTGTTTGGTGTACTAACTCTCACAAACAAGCACAGAATCCGGTGGCAGAACTCTTGGAAAGTGGCAATCTTATGATAAGAGATAAGGGAGAAACAAACAAAGAGTATTTATGGCAGAGCTTTGACTATCCATCTGATACACAATTGGCTGGGATGAAGTATGGATGGGACCTCCGAAAAGGTTTCGAATGGAAATATACTTGTTGGAAGAGTCCAGATGATCCATCTCCAGGAGACTTTTCTCGGGTTTTAAAACTCTACAACTATCCTGAATTTTATATAATGAAGGGAACACAAAAGTGGTTCAGGTTTGGACCTTGGAATGGCCTACGTTTTACAGGATCACCAAGTGTATATAACAACACCATTTTTTATATCAATATTGTCAGCAATATGAATGAGACTTACTACACATATAGCCTTGCAAATAGTGCAGTCATCACATTTAGTGTGATTAACGAAACAGGTAAATTGTATCGCTATGTGTGGGCTGAGGATGATCAAAATTGGAGCACGTTTAGATATTTCCCGAGTGAGTTTTGTGACACATATGGCCTCTGTGGACCCAACGGGAACTGCGTGAGTACCCAAACACAAGCCTGTCAATGTTTGAAAGGTTTTAAACCAAAGGCGCCGCAAAAATGGAACTCGTCTGATTGGCGTGGAGGATGTATCCGTAATGAACCGTTGAGTTGCAAAGGTAAAGACGAAGATGGGTTTAACAAATTTGAAAGGCTAAAAATTCCAGATACTACATATACTTGGTTGGATGAGAGTATTGATCTAGAGGAATGCAGAGTGCAGTGTTTGAGTAATTGTTCTTGCATGGCCTATACTAATTCAGACATAAGAAATGGAGGTAGTGGATGTGTCATGTGGTTTGGGGATCTCATTGATATTAAACAATATGAAAGTGAAGGACAAGATCTATATATCAGGATGCCTGCTTCAGAGTTAGAACCTGTTTATAGGCACAAGAGAAACACGGCAGCAGTAGTTGCTTCCATCGTTGCAGCAATTTGTGGTGTTCTTTTGCTGAGTGCTTGTTATATCTACAGATTCCGGAGGAACAGTACTGAGCAATCATTGATAGAACAATGTGAAGATAATTTGGATGTCCAAATGTTTGATCTATTCACCATTGCAACTGCCACTGACAACTTTTTCAATGCAAATAAGATTGGTGAAGGTGGTTTTGGACTTGTATACAAGGGAATATTAGTGGATGGGCAAGAGATTGCTGTAAAGACTCTATCTAGGACCTCGTGGCAAGGAGTGACAGAGTTCATAAATGAAGTCAAATTGATTGCAAAACTCCAGCATCGAAATCTTGTTAAACTTCTTGGTTGTTGCATTGAAGGACAAGAAAAAATGCTTGTTTATGAATACATGGCAAATGGCAGTCTAGACTATTTCATATTTGATGACAGAAAAAGTAATTTGCAGTGGGCTCAACGCTTCCAAATAATCTGTGGAGTTGCAAGAGGGCTTATGTATCTTCATCAAGATTCGCGCTTGAGGATTATCCATAGAGATCTCAAAGCAAGTAATGTTCTTCTTGATGAAAATTTATGCCCAAAAATCTCAGATTTTGGATTGGCTAGAATATTTGGACGCGACCAGATTGAAGGAAACACAAGTAGGATAGTTGGAACCTATGGGTACATGGCACCGGAGTATGCTGTTGATGGTTTCTTCTCTGTGAAATCTGATGTTTTTAGCTTTGGCATTCTAATGTTGGAAATTATATGTGGCAAGAAAAATAGAAGACTTTATAGTACAGATAAGAATCTTAACCTTGTTGATCACGCACAAAGAATATGGAAAAAGGGTAGGGCACTAGAGTTAGTTGATTCAAAGATAAAAGAATCATGCATTGAATCAGAGGTACTACGTTGCCTCCATATTTGTCTTTTATGTGTGCAACAAAACCCAGAAGATAGGCCCACAATGACTTCTGTAATTCTAATGTTGGAAAGTCACATGGAATTGATTGAGCCTAAACTACATGGTTTTATTACGAAAGATGTTTCACATGAAGAAGATTTATACCCAAATCAGAAACACACAAGCACAACCAACTATGTAACCATGTCCACGTTGGAAGCTCGATGA 2430 0.3934 MDIRLFILIVACTLVPSLKASTAISSIQVSQIMRDGETLVSNGGRYELGFFSPGNSQKRYLGLWYKNIPVKKILWVANRANPINDFSGILTLNTTGNLLLTQNGSLVWCTNSHKQAQNPVAELLESGNLMIRDKGETNKEYLWQSFDYPSDTQLAGMKYGWDLRKGFEWKYTCWKSPDDPSPGDFSRVLKLYNYPEFYIMKGTQKWFRFGPWNGLRFTGSPSVYNNTIFYINIVSNMNETYYTYSLANSAVITFSVINETGKLYRYVWAEDDQNWSTFRYFPSEFCDTYGLCGPNGNCVSTQTQACQCLKGFKPKAPQKWNSSDWRGGCIRNEPLSCKGKDEDGFNKFERLKIPDTTYTWLDESIDLEECRVQCLSNCSCMAYTNSDIRNGGSGCVMWFGDLIDIKQYESEGQDLYIRMPASELEPVYRHKRNTAAVVASIVAAICGVLLLSACYIYRFRRNSTEQSLIEQCEDNLDVQMFDLFTIATATDNFFNANKIGEGGFGLVYKGILVDGQEIAVKTLSRTSWQGVTEFINEVKLIAKLQHRNLVKLLGCCIEGQEKMLVYEYMANGSLDYFIFDDRKSNLQWAQRFQIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDENLCPKISDFGLARIFGRDQIEGNTSRIVGTYGYMAPEYAVDGFFSVKSDVFSFGILMLEIICGKKNRRLYSTDKNLNLVDHAQRIWKKGRALELVDSKIKESCIESEVLRCLHICLLCVQQNPEDRPTMTSVILMLESHMELIEPKLHGFITKDVSHEEDLYPNQKHTSTTNYVTMSTLEAR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00972 809 Pfam D-mannose binding lectin 73 175 IPR001480 -
Viun11g00972 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 771 - -
Viun11g00972 809 CDD STKc_IRAK 499 764 - -
Viun11g00972 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 146 - -
Viun11g00972 809 Gene3D Hepatocyte Growth Factor 336 417 - -
Viun11g00972 809 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Viun11g00972 809 ProSiteProfiles Protein kinase domain profile. 493 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00972 809 CDD B_lectin 30 149 IPR001480 -
Viun11g00972 809 SUPERFAMILY Protein kinase-like (PK-like) 474 764 IPR011009 -
Viun11g00972 809 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Viun11g00972 809 Gene3D - 20 146 IPR036426 -
Viun11g00972 809 Gene3D Phosphorylase Kinase; domain 1 468 568 - -
Viun11g00972 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 568 - -
Viun11g00972 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Viun11g00972 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 180 IPR036426 -
Viun11g00972 809 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Viun11g00972 809 SMART ntp_6 340 419 IPR003609 -
Viun11g00972 809 CDD PAN_AP_plant 334 420 - -
Viun11g00972 809 SMART blect_4 30 149 IPR001480 -
Viun11g00972 809 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 754 - -
Viun11g00972 809 PIRSF SRK 1 809 IPR024171 GO:0004674
Viun11g00972 809 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Viun11g00972 809 Pfam PAN-like domain 337 405 IPR003609 -
Viun11g00972 809 Gene3D Transferase(Phosphotransferase) domain 1 569 775 - -
Viun11g00972 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 336 419 - -
Viun11g00972 809 Pfam Protein tyrosine and serine/threonine kinase 497 760 IPR001245 GO:0004672|GO:0006468
Viun11g00972 809 SMART serkin_6 493 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00972 Viun-Chr11 19603055 19612829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00972 437 777 Receptor kinase-like Gene Family AT4G23230 55.652 1.50e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00972 PK_Tyr_Ser-Thr 8.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00972 - - gmx:100802962 1168.3