Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00965 ATGTCAGAAGATCAGTTTCAAGCAAGTGGAAACTGGTGGGAATCAGCAAGACACGTTAGGTTTGAGAGTGGTGAAACGCAGTCTTCTTCTTCTGGCCTCACCAACATGGGAAACTATGCTTGGCAGCAAGATATGGCTAGGTCTTCTCCTATGGATAACTCTGCCTCAGGAGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAACTTCAAGTTCAGCCACATCATGACTCATCAGCCACAAATCCCACCAATGACCATCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCCCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTGCGAGGTGAGAAGGGTTCTGAAGGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCACCAGGCACCACGTTTCATGAAGAAAGTGGGAATAATAATATTGCGTTGTCTCATCATCAACAAGTTCATTGGAGGCCAGAAAAATTGTTCTCTGCGGAGCCATCAAGCAATGAACTGAAGAGGGGTTTCTCCTTGGACCAAACACAGTTCAGTCCTCAATATAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTATGTCGGTAACCCTTCTTCAATATTGCAAGGACTTTTGGGACATGAGAGCAATAACCAACAACCCCACCAAGGTGGTAGTGGTTCTTATGAGAATCGTTCCATGAATTTTCCTTACTCAGCAACCAGCTATGGATTAAGCTCAAATATTGAGTTAGTGCCTTCTTGGTCAAAGGTGCCTCAGTTCTTAAGAGCTTCACCACCAAAACAACAACCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGAGCCTGCTATAAAGGATGCTCGATCCAGCTTCATCTCCTCTTTGCAAACCCCCTTCTCGCCATCAAATTTCGATGTTCAATCAAAGAATACATCTGAAGTTAGGGACTCGGGTGTCGTGAAGAAAAGTGGGAGTGAAACAGCACCAAAAAGGCCCAGGAACGAAAACCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTTCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTTTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTCTCCGTTTTAAGCACGCCATATATGAAAAGTGGTGCTCCCATACAGCACCAGCAGAGTTCAGGTAAATCGAAGGAATCTGAAGGTCCAAAGCAAGATCTTAGAAGCCGGGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTACAGATAG 1401 0.4525 MSEDQFQASGNWWESARHVRFESGETQSSSSGLTNMGNYAWQQDMARSSPMDNSASGGSSVVFHDQKQLQVQPHHDSSATNPTNDHPNLHMMGLGLSSQAMDWNQASLQLRGEKGSEGSFRSMLQENLSSPGTTFHEESGNNNIALSHHQQVHWRPEKLFSAEPSSNELKRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDYVGNPSSILQGLLGHESNNQQPHQGGSGSYENRSMNFPYSATSYGLSSNIELVPSWSKVPQFLRASPPKQQPNNQLHFTNNAPFWNANSEPAIKDARSSFISSLQTPFSPSNFDVQSKNTSEVRDSGVVKKSGSETAPKRPRNENPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00965 466 SMART finulus 357 401 IPR011598 GO:0046983
Viun11g00965 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 413 IPR036638 GO:0046983
Viun11g00965 466 CDD bHLH_AtbHLH_like 352 403 IPR045239 -
Viun11g00965 466 MobiDBLite consensus disorder prediction 213 237 - -
Viun11g00965 466 MobiDBLite consensus disorder prediction 410 434 - -
Viun11g00965 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Viun11g00965 466 MobiDBLite consensus disorder prediction 314 354 - -
Viun11g00965 466 Gene3D - 356 418 IPR036638 GO:0046983
Viun11g00965 466 FunFam Transcription factor bHLH123 family 356 418 - -
Viun11g00965 466 MobiDBLite consensus disorder prediction 69 92 - -
Viun11g00965 466 MobiDBLite consensus disorder prediction 69 87 - -
Viun11g00965 466 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 135 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00965 Viun-Chr11 18722948 18726955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00965 111 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.258 5.00e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00965 - - gmx:100797286 754.592