Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00958 ATGGTCAAAAAGATAGGCGAAGCAAGCTTGGGAGATGCATTTTCTGTGAATCTATGTGAGTTGCTTCTTGAACTATCCGACAACATCATTTGTAAATGTGCTCTTGGACAGAAGTACACTAACAACATGGTCAAAGAGCTTGCAAGGAGGTTGATGATTCAACTTGCAGCTGACACTTGGGGATCTGATTTTCCAATCGGTGGAGTGATATCTAAGAAAATTCTCCCTGCATGTGTTCCCACTTTGTTGGAAGTCATGCGAGATCCACATGTAGTTGTAGATGGTTTTACTTATGAAGCTAAGACTATACAAGGATGGCTTAATGGTAGTAATGACAACTCACCAATGACTATTGATAAGCTTGACCCTCACAATCTTGTTCCTAATTATGCTCTTCGTTCTGCAATCCATGATTGGCTTCAAAACCGTCAAAATATGATGTATTTTGTGACAGTTTTTAACCGTCTAAATATGATGAAATATAAATAA 489 0.3824 MVKKIGEASLGDAFSVNLCELLLELSDNIICKCALGQKYTNNMVKELARRLMIQLAADTWGSDFPIGGVISKKILPACVPTLLEVMRDPHVVVDGFTYEAKTIQGWLNGSNDNSPMTIDKLDPHNLVPNYALRSAIHDWLQNRQNMMYFVTVFNRLNMMKYK 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00958 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 148 IPR013083 -
Viun11g00958 162 ProSiteProfiles U-box domain profile. 73 146 IPR003613 GO:0004842|GO:0016567
Viun11g00958 162 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 84 145 - -
Viun11g00958 162 SMART Ubox_2 80 139 IPR003613 GO:0004842|GO:0016567
Viun11g00958 162 Pfam U-box domain 80 144 IPR003613 GO:0004842|GO:0016567
Viun11g00958 162 SUPERFAMILY RING/U-box 82 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00958 Viun-Chr11 17724203 17724976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00958 80 142 U-box Gene Family AT2G45910 57.143 6.39e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00958 - - vun:114170223 333.954