Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00937 ATGGAGCAGGAGATGGAGAACATAGAGTCTCAAACTTCCAACATAACAACAGTACAAGACGAAGCACCTGAGCTCTTTTGCAAGGGAAATCCCTCAATAACTCTAAAGTTCCGCGATGTTATTTATAAAATTAAGAGCAGAAAGGGGGGATTTTTGAAGAGCAAAATAGAAGAGAAAGTAGTTCTGAATGGAGTGACAGGCATGGTTGAACCTGGAGAAATTCTTGCCATGTTAGGTCCCTCTGGAAGTGGCAAAACTACTTTGCTAGCAGCATTGGGAGGCAAGCTTGGAGGAAAACTTTATGGAAGCATAACATATAATGGAAAAGCCTTCTCAAATGCAATGAAGAGGAAAACAGGTTTTGTGACACAAGATGACGTTCTGTATCCCCACTTGACTGTGACAGAAACTCTTGTGTTCACAGCCTTTCTAAGATTGCCAAGCAGTTTATCCAAAATGGAGAAAATTGAGCATGCAAAAGCTGTGGTGGCTCAACTTGGTTTAACCAAGTGCAAGGACAGCATCATTGGAGGCCCACTTCTTAGAGGTGTTTCTGGTGGGGAGAGAAAAAGGGTTAGTATTGGACAAGAAATGCTCATAAACCCAAGCTTGCTATTTCTGGACGAGCCAACCTCTGGCCTAGACTCAACAACAGCTCAAAGAATTGTCTCAATTTTGTGGGAGCTAGCAAATGGAGGGAGAACTGTTGTGATGACCATACATCAACCTTCAAGTAGGATTTACTCCATGTTTCACAGGGTATTACTGCTTTCAGAAGGGAACCTACTCTATTTTGGAAATGGGTCTGAAGCTATAGAATATTTTACTAATATTGGATTTGCCCCTACCATGCCATTGAACCCCTCAGATTTCCTTTTGGATCTTGCAAATGGTGTCTACACTGGTCAATCGAATGAGGACCATGCCTTGAATAAGAACAAATTGATTTCCGCATATAGGAACTACTTTGATGTCAAATTTAAGCCAGTAATTCAAGAAATTCCAGAATACGGTAGGACTCAGGGTAGATTTGAAGGCAATGAATTTGGGGAATGGCCTACCAGTTGGTCAGACCAGTTTCTTGTACTGCTGGAAAGGGATGTTAAAGAGAGAAAATATGCATCATTTTCTGGCCTGAAGGTTTTTCAGGTTCTTGTGGTTGCTCTTATTACAGGATTACTATGGTATAAGTGTGATATTTCACGCTTGCAGGATCAGATTGGAATTCTATTCTTCCTTACTAGCTTTTGGGGTAGCATGCCGCTCTATCAAGCAATATTCACATTCCCTCAAGAGCTAATGATGCTGGAGAAGGAACGATCCTCTGGAATGTACAAGCTCTCTTCATACTTCATGTCAAGGATGGTTGGTGACCTTCCAATGGAGCTTGTGCTTCCATCCATATTCCTCACCATAATCTATTGGTTGGTAGGGTTGAAAAACAATGTGGTAAACTTCTCATTCACACTTCTCACTATTTTACTCGATGTCTTGGTTTCACAAGGACTAGGCCTTGCCATTGGTGCTATTGTAATGGACCAGAAATCCGCAACCACACTGGCCTCAGTGATTGTGCTAACTTCTGTTCTAGTTAGTGGATACTATATTCAACATGTACCAAAATTTGTAGCATGGCTCAAGTACTTCTCCATTAACTACTACATATACCATCTCCTGATTGGGTCTCAGTATGGCTCAAATGACACATACCCATGTTCTCATGGACAGTGTTTGGTTGCAGAATATCCTTTGATAGAACAAATGGGGTTACATTTTCAAGGGAAAATCATGGCTGCATCGGCTCTATTCATTATGCTTATAGGATACAGATTAGTGGCTTATTTGGCTCTGATGAAGATTGGGATGACAAAGAAAATGCGGTAG 1884 0.4124 MEQEMENIESQTSNITTVQDEAPELFCKGNPSITLKFRDVIYKIKSRKGGFLKSKIEEKVVLNGVTGMVEPGEILAMLGPSGSGKTTLLAALGGKLGGKLYGSITYNGKAFSNAMKRKTGFVTQDDVLYPHLTVTETLVFTAFLRLPSSLSKMEKIEHAKAVVAQLGLTKCKDSIIGGPLLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSILWELANGGRTVVMTIHQPSSRIYSMFHRVLLLSEGNLLYFGNGSEAIEYFTNIGFAPTMPLNPSDFLLDLANGVYTGQSNEDHALNKNKLISAYRNYFDVKFKPVIQEIPEYGRTQGRFEGNEFGEWPTSWSDQFLVLLERDVKERKYASFSGLKVFQVLVVALITGLLWYKCDISRLQDQIGILFFLTSFWGSMPLYQAIFTFPQELMMLEKERSSGMYKLSSYFMSRMVGDLPMELVLPSIFLTIIYWLVGLKNNVVNFSFTLLTILLDVLVSQGLGLAIGAIVMDQKSATTLASVIVLTSVLVSGYYIQHVPKFVAWLKYFSINYYIYHLLIGSQYGSNDTYPCSHGQCLVAEYPLIEQMGLHFQGKIMAASALFIMLIGYRLVAYLALMKIGMTKKMR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00937 627 SMART AAA_5 71 261 IPR003593 GO:0016887
Viun11g00937 627 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 284 IPR003439 GO:0005524
Viun11g00937 627 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 614 - -
Viun11g00937 627 Gene3D - 49 278 IPR027417 -
Viun11g00937 627 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Viun11g00937 627 Coils Coil 1 21 - -
Viun11g00937 627 Pfam ABC-2 type transporter 359 563 IPR013525 GO:0016020|GO:0140359
Viun11g00937 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 276 IPR027417 -
Viun11g00937 627 FunFam ABC transporter G family member 22 51 278 - -
Viun11g00937 627 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Viun11g00937 627 Pfam ABC-2 type transporter 241 311 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00937 Viun-Chr11 16556504 16559909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00937 61 340 Calmodulin-binding Proteins AT2G36910 24.476 3.33e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00937 K05681 - gmx:100812397 971.074