Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00936 ATGGGAGTTCCAGAGAGAGACCCTCTCGCACAGTTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAGTACCTTTGTCGTAAGGTTGCTGGGCACCATTTTTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAAGAATGGTATTTCTTCAGCCCGAGAGATAGGAAGTACCCGAATGGTTCACGGCCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACGGGAACCGATAAGGTTATCACCACCGAAGGGAGAAAAGTTGGCATAAAAAAGGCACTTGTTTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCATGAGTATCGTGTTCTTGACTCTTCGCGCAAAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGGCCAACCTTTGGGCCAAAGAATGCAGCAATGGGTCATCACCTTCTTCATCTTCCCACGTGGAAGACATGGTCGAATCGTTTCTGGAGATCGATGATCAGTGCTTCAATTTTCCGGGTGTGAACTCGATCAAATCAATGCAACAACAGGACGAGAAATTCGGGTTTCAAAAGATGGGATCCGGATTCTTTTCTGATTGGGTCACCCCGCCGGATCTTGATTCGATTTCCGAATTCGGGTCAGGTTGCCGAACCCAAGGGATGGTGAATTATGAGTTCCATGACTTATTTGTCCCTTCTGTGCCGCCGTTTGGTCACATGGAGTTCATGTCAGGGGCACCCACGGAGGAGGAAGTTCAAAGCTCTGTGAGAACCCAACAGGCTGACGGAGCGGGATATTTTCAGCAGAACCCGAATGCCCGAAATTTGTCCGGCTCCAACGAAACGTTTGGGTTGGGGTTTATGGATCAGCAGATCAGGTTCGGACAGAACTAG 1008 0.4772 MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKVEANLWAKECSNGSSPSSSSHVEDMVESFLEIDDQCFNFPGVNSIKSMQQQDEKFGFQKMGSGFFSDWVTPPDLDSISEFGSGCRTQGMVNYEFHDLFVPSVPPFGHMEFMSGAPTEEEVQSSVRTQQADGAGYFQQNPNARNLSGSNETFGLGFMDQQIRFGQN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00936 335 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Viun11g00936 335 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Viun11g00936 335 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Viun11g00936 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Viun11g00936 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 198 - -
Viun11g00936 335 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00936 Viun-Chr11 16461521 16463576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00936 1 293 NAC Transcription Factor Family AT1G52890 60.000 8.92e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun11g00936 NAM 3.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00936 - - gmx:100811301 585.489