Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00933 ATGAAGATTGGATGGAACCTTAAGAAGGGTCTCATCTGGCGATTTACCGCGTGGAAGAACTGGGATGACCCTTCTCCAGGGAACTTCAGTTGGGGTATGGAGCTTGGTAACACTCGTGAACTGGTTATGTGGAAAGGTTCTAGTGAGTATTATAGAAGTGGCCCTTGGAATGGTGTCAGATTCAGTGGCAAATACACTCCCCGTTACAACTTAGAATTTAATTCCACTCCTGATGAAGTGTATTATACATACAAATTTGCGAGCAATTCAATTATTACAAGGGTTGTTTTGAACCAATCCCTTTATTCTCGGCACCGCTATAATTGGATTACTCAGAACCAAACTTGGAGTCTTTATTCCGTTGTTCCCATAGACAAATGTGATAGCTTCAATGTTTGTGGCCCCTATGGGAGTTGTAATGGTGGTGAACCATTGCACTGCGAGTGTTTAATGGGGTTCAAACCAAAATCAGTACAAAATTATGAGGCATTGGATTCGAGTCAGGGATGTGTGCCTAGTGGACCGTGGGGCTGTGGTAAAACAGACAATGATTTTCAAAAATTTAGTGGCTTGAAATTGCCGGATACTACAAGGTCTTGGATTCATCCAAATTTGACTCTCGAGAGTTGCAAGGCCAAATGCTTGCAAAATTGTTCTTGCATAGCATATGCAAACTTGGATATCAGAGATGGTAGTGGTTGTATCATTTGGTATGAAGCTTTGGTGGATTTAACGTTGGCTTCACTCCCGGGGCCAGATCTATATATTCGAAGGACTGCTTCAGAAATAGAAAAGAGAGGGCCTAAGATATTGGCAGCAGTGCTGATTCCAGTTATTCTCCTGACTTTTGTGATTGCTTTCATATTCACATATAGTTATTGGCGCAAAAGAAAGCATATAGAGAAGGCATCAGAAGAAAGTAAAAGTGAAAGCAGTGAAGGAGACTTAGATCTTCCTTTCTTTGATTTTCCTACAATAGTTCGTGCCACCAACGATTTCTCAAGAGACAAGATGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTCGCAGATGGACAAGAGATCGCTGCCAAGAGGCTTTGTAGTAATACTGGCCAAGGAATGAAAGAATTCAAGAATGAAGTTATATTGTGTGCCAAACTACAGCACCGGAATCTTGTAAAGCTTCTCGGTTGTTCCATTGAAGGAGAGGAGAAAATTTTGGTCTACGAATACATGCCCAATAAAAGCTTGGACTACTTTCTCTTTGATTCTTCCAGAAAAGGAATCCTAAACTGGTCAAAGCGGTTGAACATTATACATGGCATTGCTCGTGGACTTCTATATCTTCACCAAGATTCTAGATTAAGAATCATTCATAGAGATATGAAAGCGAGTAATATCCTGTTAGACAATGAGCTGAATCCAAAAATTTCTGATTTTGGTATAGCACGAATGTTTAGAGGGAATCAAACGGAAGGAAATACGAAACAAGTTGTTGGAACATATGGGTACATGGCACCAGAATACACAATAAATGGACTGTTCTCAATCAAATCTGATGTATACAGTTTTGGAATACTGCTACTAGAGATAGTAAGTGGCAAGAGAAATGGAGGAATTTTCTTTCCAGATCACGGACATAATCTATTAGAACATGCTTGGAGATTTTGGAAAGGGGACACTCCTATGAAATTAGTTGATACTTCTTTGGATGACTGCTTTAACACTTCAGAAGCATTACGCTGCATTCATGTTGGTCTTCTTTGTGTGCAACTACATCCAGAGAATAGGCCAAATATGGCATCGGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCCAGAACCCAAGGAACCTGGGTTTCTTATTGCAAGGATGAAAACTGCCGGCGAATGCTCAACTAGCAATGCAATTAAGACTTCCACCAATGAATTAACTATAACCCTGCCACAACCTAGGTAA 1953 0.404 MKIGWNLKKGLIWRFTAWKNWDDPSPGNFSWGMELGNTRELVMWKGSSEYYRSGPWNGVRFSGKYTPRYNLEFNSTPDEVYYTYKFASNSIITRVVLNQSLYSRHRYNWITQNQTWSLYSVVPIDKCDSFNVCGPYGSCNGGEPLHCECLMGFKPKSVQNYEALDSSQGCVPSGPWGCGKTDNDFQKFSGLKLPDTTRSWIHPNLTLESCKAKCLQNCSCIAYANLDIRDGSGCIIWYEALVDLTLASLPGPDLYIRRTASEIEKRGPKILAAVLIPVILLTFVIAFIFTYSYWRKRKHIEKASEESKSESSEGDLDLPFFDFPTIVRATNDFSRDKMLGQGGFGPVYRGTLADGQEIAAKRLCSNTGQGMKEFKNEVILCAKLQHRNLVKLLGCSIEGEEKILVYEYMPNKSLDYFLFDSSRKGILNWSKRLNIIHGIARGLLYLHQDSRLRIIHRDMKASNILLDNELNPKISDFGIARMFRGNQTEGNTKQVVGTYGYMAPEYTINGLFSIKSDVYSFGILLLEIVSGKRNGGIFFPDHGHNLLEHAWRFWKGDTPMKLVDTSLDDCFNTSEALRCIHVGLLCVQLHPENRPNMASVIFMLSGENILPEPKEPGFLIARMKTAGECSTSNAIKTSTNELTITLPQPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00933 650 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 52 630 - -
Viun11g00933 650 CDD STKc_IRAK 339 604 - -
Viun11g00933 650 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 409 612 - -
Viun11g00933 650 SMART serkin_6 333 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00933 650 Pfam Protein tyrosine and serine/threonine kinase 336 550 IPR001245 GO:0004672|GO:0006468
Viun11g00933 650 Pfam S-locus glycoprotein domain 51 157 IPR000858 GO:0048544
Viun11g00933 650 SMART ntp_6 180 258 IPR003609 -
Viun11g00933 650 Gene3D Phosphorylase Kinase; domain 1 293 408 - -
Viun11g00933 650 ProSiteProfiles EGF-like domain profile. 123 159 IPR000742 -
Viun11g00933 650 ProSiteProfiles Protein kinase domain profile. 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00933 650 ProSiteProfiles PAN/Apple domain profile. 178 259 IPR003609 -
Viun11g00933 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Viun11g00933 650 Gene3D Transferase(Phosphotransferase) domain 1 409 610 - -
Viun11g00933 650 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 296 408 - -
Viun11g00933 650 SUPERFAMILY Protein kinase-like (PK-like) 318 619 IPR011009 -
Viun11g00933 650 CDD PAN_AP_plant 178 257 - -
Viun11g00933 650 Pfam PAN-like domain 178 244 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00933 Viun-Chr11 16176320 16179487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00933 296 650 Receptor kinase-like Gene Family AT4G11530 52.762 4.80e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00933 PK_Tyr_Ser-Thr 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00933 - - qsu:112016032 761.14