Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00930 ATGGTTTGTTACACTTTTCTGTTTGTTTTGGCCGAACTAAGCATGTTGTTCCCTTCAATTTCGTCTGCAACTGATACCTTTAACGGGTCGCAGTCCCTTCCCGATGGCGCAACCTTGGTGTCAGAAGATGGAACATTTGAAATGGGTTTCTTCAGTCCAAGCAACAGTAACACAACTACAAATCGCTACCTTGGAATATGGTACAAAAGTATCCCAGTTAGAACCGTTGTTTGGGTTGCCAACCGTGAAAACCCAGTTAAGGATAACTCCAGCAAGTTGAGCATAAGCACACAAGGAAAACTAGTGATCCTCAGCAATAACAATACTCTCGTTTGGTCAGCGCATACAACTGAAGAAACAAAATCACAGAGTATAATTGTTCAGCTTTTGAACTCAGGGAACTTGGTGGTAAGAGATGAGAAAGATTCAAGTCCACAGAATTTCTTTTGGGAAAGCTTTGACTATCCTTGTGATACTTTTCTTCCAGGAATGAAGATTGGATGGAACCTTAAGAAGGGTCTCATCTGGCGATTTACCGCGTGGAAGAACTGGGATGACCCTTCTCCAGGGAACTTCAGTTGGGGTATGGAGCTTGGTAACACTCGTGAACTGGTTATGTGGAAAGGTTCTAGTGAGTATTATAGAAGTGGCCCTTGGAATGGTGTCAGATTCAGTGGCAAATACACTCCCCGTTACAACTTAGAATTTAATTCCACTCCTGATGAAGTGTATTATACATACAAATTTGCGAGCAATTCAATTATTACAAGGGTTGTTTTGAACCAATCCCTTTATTCTCGGCACCGCTATAATTGGATTACTCAGAACCAAACTTGGAGTCTTTATTCCGTTGTTCCCATAGACAAATGTGATAGCTTCAATGTTTGTGGCCCCTATGGGAGTTGTAATGGTGGTGAACCATTGCACTGCGAGTGTTTAATGGGGTTCAAACCAAAATCAGTACAAAATTATGAGGCATTGGATTCGAGTCAGGGATGTGTGCCTAGTGGACCGTGGGGCTGTGGTAAAACAGACAATGATTTTCAAAAATTTAGTGGCTTGAAATTGCCGGATACTACAAGGTCTTGGATTCATCCAAATTTGACTCTCGAGAGTTGCAAGGCCAAATGCTTGCAAAATTGTTCTTGCATAGCATATGCAAACTTGGATATCAGAGATGGTAGTGGTTGTATCATTTGGTATGAAGCTTTGGTGGATTTAACGTTGGCTTCACTCCCGGGGCCAGATCTATATATTCGAAGGACTGCTTCAGAAATAGAAAAGAGAGGGCCTAAGATATTGGCAGCAGTGCTGATTCCAGTTATTCTCCTGACTTTTGTGATTGCTTTCATATTCACATATAGTTATTGGCGCAAAAGAAAGCATATAGAGAAGGCATCAGAAGAAAGTAAAAGTGAAAGCAGTGAAGGAGACTTAGATCTTCCTTTCTTTGATTTTCCTACAATAGTTCGTGCCACCAACGATTTCTCAAGAGACAAGATGCTTGGCCAAGGTGGTTTTGGACCTGTGTATAGGGGTACACTCGCAGATGGACAAGAGATCGCTGCCAAGAGGCTTTGTAGTAATACTGGCCAAGGAATGAAAGAATTCAAGAATGAAGTTATATTGTGTGCCAAACTACAGCACCGGAATCTTGTAAAGCTTCTCGGTTGTTCCATTGAAGGAGAGGAGAAAATTTTGGTCTACGAATACATGCCCAATAAAAGCTTGGACTACTTTCTCTTTGATTCTTCCAGAAAAGGAATCCTAAACTGGTCAAAGCGGTTGAACATTATACATGGCATTGCTCGTGGACTTCTATATCTTCACCAAGATTCTAGATTAAGAATCATTCATAGAGATATGAAAGCGAGTAATATCCTGTTAGACAATGAGCTGAATCCAAAAATTTCTGATTTTGGTATAGCACGAATGTTTAGAGGGAATCAAACGGAAGGAAATACGAAACAAGTTGTTGGAACATATTTTGGAATACTGCTACTAGAGATAGTAAGTGGCAAGAGAAATGGAGGAATTTTCTTTCCAGATCACGGACATAATCTATTAGAACATGCTTGGAGATTTTGGAAAGGGGACACTCCTATGAAATTAGTTGATACTTCTTTGGATGACTGCTTTAACACTTCAGAAGCATTACGCTGCATTCATGTTGGTCTTCTTTGTGTGCAACTACATCCAGAGAATAGGCCAAATATGGCATCGGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCCAGAACCCAAGGAACCTGGGTTTCTTATTGCAAGGATGAAAACTGCCGGCGAATGCTCAACTAGCAATGCAATTAAGACTTCCACCAATGAATTAACTATAACCCTGCCACAACCTAGGTAA 2379 0.4069 MVCYTFLFVLAELSMLFPSISSATDTFNGSQSLPDGATLVSEDGTFEMGFFSPSNSNTTTNRYLGIWYKSIPVRTVVWVANRENPVKDNSSKLSISTQGKLVILSNNNTLVWSAHTTEETKSQSIIVQLLNSGNLVVRDEKDSSPQNFFWESFDYPCDTFLPGMKIGWNLKKGLIWRFTAWKNWDDPSPGNFSWGMELGNTRELVMWKGSSEYYRSGPWNGVRFSGKYTPRYNLEFNSTPDEVYYTYKFASNSIITRVVLNQSLYSRHRYNWITQNQTWSLYSVVPIDKCDSFNVCGPYGSCNGGEPLHCECLMGFKPKSVQNYEALDSSQGCVPSGPWGCGKTDNDFQKFSGLKLPDTTRSWIHPNLTLESCKAKCLQNCSCIAYANLDIRDGSGCIIWYEALVDLTLASLPGPDLYIRRTASEIEKRGPKILAAVLIPVILLTFVIAFIFTYSYWRKRKHIEKASEESKSESSEGDLDLPFFDFPTIVRATNDFSRDKMLGQGGFGPVYRGTLADGQEIAAKRLCSNTGQGMKEFKNEVILCAKLQHRNLVKLLGCSIEGEEKILVYEYMPNKSLDYFLFDSSRKGILNWSKRLNIIHGIARGLLYLHQDSRLRIIHRDMKASNILLDNELNPKISDFGIARMFRGNQTEGNTKQVVGTYFGILLLEIVSGKRNGGIFFPDHGHNLLEHAWRFWKGDTPMKLVDTSLDDCFNTSEALRCIHVGLLCVQLHPENRPNMASVIFMLSGENILPEPKEPGFLIARMKTAGECSTSNAIKTSTNELTITLPQPR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00930 792 PIRSF SRK 1 662 IPR024171 GO:0004674
Viun11g00930 792 PIRSF SRK 663 792 IPR024171 GO:0004674
Viun11g00930 792 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Viun11g00930 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 572 663 - -
Viun11g00930 792 Gene3D Phosphorylase Kinase; domain 1 456 571 - -
Viun11g00930 792 Pfam PAN-like domain 341 407 IPR003609 -
Viun11g00930 792 Gene3D Transferase(Phosphotransferase) domain 1 663 752 - -
Viun11g00930 792 Gene3D Transferase(Phosphotransferase) domain 1 572 662 - -
Viun11g00930 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 571 - -
Viun11g00930 792 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Viun11g00930 792 Pfam S-locus glycoprotein domain 214 320 IPR000858 GO:0048544
Viun11g00930 792 CDD B_lectin 30 156 IPR001480 -
Viun11g00930 792 Pfam D-mannose binding lectin 75 182 IPR001480 -
Viun11g00930 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 187 IPR036426 -
Viun11g00930 792 ProSiteProfiles Protein kinase domain profile. 496 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00930 792 Pfam Protein kinase domain 497 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00930 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 153 - -
Viun11g00930 792 Gene3D - 19 153 IPR036426 -
Viun11g00930 792 SMART serkin_6 496 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00930 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Viun11g00930 792 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Viun11g00930 792 SMART ntp_6 343 421 IPR003609 -
Viun11g00930 792 CDD PAN_AP_plant 341 420 - -
Viun11g00930 792 SUPERFAMILY Protein kinase-like (PK-like) 481 761 IPR011009 -
Viun11g00930 792 SMART blect_4 30 156 IPR001480 -
Viun11g00930 792 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00930 Viun-Chr11 16176029 16179487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00930 484 792 Receptor kinase-like Gene Family AT4G11530 50.742 8.75e-110 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00930 Pkinase 2.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00930 - - qsu:112024700 882.863