LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00903	ATGGTGAAGATGGAACTTATGAGATGGGTTCCCTGGGTTTTGGTTGTTGTTTTTCTATTTTTGGTTAATGGGTCGTTTTCCTTATATACTCCTACTGATAGCTATCTAATTGCATGTGGTTCTTCTCAAAACATCACCTTTCAAGGTCGCACTTTTGTCCCTGACTCACAGCATTCTTCACTTGTAATGAAAACTGGGAATTCTTTTGTTGCTAGCACCAATTCTAGTAGTGCCCCTTTCCCCATTTACCAATCGGCTCGGGTTTTCACCGAGAAGGCTTCTTATAGGTTTGAGATTCAGCAAGAAGGTAGGCACTGGGTTAGGCTATACTTTTCCCCTATTCCAAACTCCAGCCACAACTTGACTTCAGCTTCTTTAACAGTGGTTACTGATGATTTTGTACTCTTGAGCAACTTCACCTTTAGGAAATACAATGGTTCTTATATGTTCAAGGAGTATGCAGTGAATGTAACCTCTGATACATTGGTTGTGACCTTCATTCCTTCCAATGGCTCGGTGGCCTTTGTGAATGGAATTGAAGTTGTGTCAATGCCAAATGAGGTTTTTGTTGATCAAGCACTTGCTGTTAACCCGCCAGCACCATTCAACGGACTTTCTGACCTTGCCTTTGAAACTGTTTATCGGTTGAATATGGGGGGTCCTTTGATTACTTCTGAAAATGACACCCTGGGTAGGACTTGGCTGAATGATAGAAAATACCTTCATGTGAACAGCTCCGTCCTTAATGTATCGGTGAATCCTTCAAGCATTAAGTATCCCGTGGCTGTTACACCTGAGACTGCCCCAAATTGGGTCTATGCCACTGCTGAAGCAATGGGGGATGCTAATGTAAATGATCCAAATTTCAACATCACTTGGGTCTTCAATGTGGATCCAAATTTCTCCTATTTCATCCGGGTGCACTTCTGTGATATTATGAGCAAGTCACTCAACACTTTAGTCTTCAATATGTTCATAAATTCTGACATAGCTCTTCAAAGCCTTGATCTCTCAACCATGACTAATGACTTGGCTGTGCCTTACTTCAAGGACTTTGTTGCCAATGCCTCTGCAGACTCCAACACTTTGACTGTGAGTGTTGGTCCAGATCCTGTGGCAGACTTTCCAAATGCCACCATGAATGGGTTGGAGATAATGAAGATCAGCAACTCGTTAAAGAGCTTGGATGGGCTTTATTCAGTTCACAGTCTTCTTCCAGGTTCACATTCAAAAAAAAGCATGGTAGGAGTAATTGTTGGTTCTGCTGTTGGTGCTATAGCAGCTTTAGCAATAGCTGGTTTGTGTTATTGCTGCTTGGTGGGACGCAAATCAAAGTCATCCACTCAACAGGGCCATTCATGGCTGCCTCTGCCCCTTTATGGAAACTCTCTCACCATGACGAAAAATTCAACACTTTCACAGAAGAGTGGAACCGCAAGCTGCATTTCTTTAGCTTCATCAAATCTCGGACGGTTCTTCAATTTCCAGGAAATCCTAGATGCTACCAACAAATTTGATGAGAAGCTACTTCTGGGTGTTGGTGGTTTTGGAAGGGTTTACAAAGGAACGCTTGAAGATGGGACCAATGTAGCTGTGAAAAGGGGTAATCCAAGATCTGAGCAAGGCCTTGCAGAATTTAGAACAGAAATTGAAATGTTATCCAAGCTACGCCATCGCCATCTTGTGTCCCTCATTGGTTATTGTGATGAGAGGTCAGAAATGATTCTTGTGTATGAATACATGGCTAACGGACCTCTCAGGAGTCATTTGTATGGAACAGAGTTACCACCTCTCTCATGGAAGCAGCGGCTGGAGATTTGCATTGGAGCTGCAAGAGGCCTTCATTATCTCCACACAGGAGCAGCTCAAAGCATAATCCACCGAGATGTGAAGACAACAAATATCCTCTTAGATGAGAACTTTGTTGCCAAAGTTGCTGATTTTGGCCTCTCCAAGACCGGTCCTTCTCTTGATCAGACCCATGTGAGCACTGCTGTGAAGGGTAGTTTTGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACTGAAAAATCAGATGTGTATTCATTTGGGGTAGTGTTGATGGAAGTGTTATGCACAAGACCAGCCTTGAACCCTGTTCTTCCAAGGGAGCAGGTAAACATAGCTGAATGGGCAATGACATGGCAGAAAAAGGGTATGCTTGATCAAATCATGGATCAGAATCTTGTTGGCAAGGTGAATCCTGCATCCCTGAAGAAGTTCGGGGAGACCGCCGAGAAGTGCTTGGCCGAGCACGGCGTGGACCGGCCGTCTATGGGAGATGTTTTGTGGAATCTTGAGTATGCATTGCAGCTTCAAGAGACATCATCAGCGCTCATGGAGCCAGAAGATAACAGCACAAACCACATCACTGGAATTCAGTTGACACCACCAGACCATTTTGATAACAGTGTGAGTATGATTGATGGGGGAAATTCTTGCACTGATGATGATGCAGAAGATGCTGCTACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGTGGAAGATGA	2541	0.4376	MVKMELMRWVPWVLVVVFLFLVNGSFSLYTPTDSYLIACGSSQNITFQGRTFVPDSQHSSLVMKTGNSFVASTNSSSAPFPIYQSARVFTEKASYRFEIQQEGRHWVRLYFSPIPNSSHNLTSASLTVVTDDFVLLSNFTFRKYNGSYMFKEYAVNVTSDTLVVTFIPSNGSVAFVNGIEVVSMPNEVFVDQALAVNPPAPFNGLSDLAFETVYRLNMGGPLITSENDTLGRTWLNDRKYLHVNSSVLNVSVNPSSIKYPVAVTPETAPNWVYATAEAMGDANVNDPNFNITWVFNVDPNFSYFIRVHFCDIMSKSLNTLVFNMFINSDIALQSLDLSTMTNDLAVPYFKDFVANASADSNTLTVSVGPDPVADFPNATMNGLEIMKISNSLKSLDGLYSVHSLLPGSHSKKSMVGVIVGSAVGAIAALAIAGLCYCCLVGRKSKSSTQQGHSWLPLPLYGNSLTMTKNSTLSQKSGTASCISLASSNLGRFFNFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTELPPLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPPDHFDNSVSMIDGGNSCTDDDAEDAATSAVFSQLVNPRGR	846

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00903	846	Gene3D	Phosphorylase Kinase; domain 1	464	580	-	-
	Viun11g00903	846	FunFam	Putative receptor-like protein kinase	34	185	-	-
	Viun11g00903	846	Pfam	Malectin-like domain	37	388	IPR024788	-
	Viun11g00903	846	SUPERFAMILY	Protein kinase-like (PK-like)	484	776	IPR011009	-
	Viun11g00903	846	PANTHER	OS07G0166700 PROTEIN	491	782	IPR045272	GO:0004714\|GO:0006468
	Viun11g00903	846	Pfam	Protein tyrosine and serine/threonine kinase	510	772	IPR001245	GO:0004672\|GO:0006468
	Viun11g00903	846	FunFam	Receptor-like protein kinase FERONIA	209	390	-	-
	Viun11g00903	846	PIRSF	SRK	373	813	IPR024171	GO:0004674
	Viun11g00903	846	PIRSF	SRK	26	173	IPR024171	GO:0004674
	Viun11g00903	846	Gene3D	Transferase(Phosphotransferase) domain 1	581	802	-	-
	Viun11g00903	846	SMART	serkin_6	505	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00903	846	CDD	STKc_IRAK	511	776	-	-
	Viun11g00903	846	FunFam	Receptor-like protein kinase FERONIA	581	797	-	-
	Viun11g00903	846	ProSiteProfiles	Protein kinase domain profile.	505	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00903	846	Gene3D	-	208	390	-	-
	Viun11g00903	846	Gene3D	-	33	185	-	-
	Viun11g00903	846	ProSitePatterns	Protein kinases ATP-binding region signature.	511	533	IPR017441	GO:0005524
	Viun11g00903	846	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	625	637	IPR008271	GO:0004672\|GO:0006468
	Viun11g00903	846	FunFam	receptor-like protein kinase FERONIA	467	580	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00903	Viun-Chr11	14446720	14450235	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00903	29	846	Receptor kinase-like Gene Family	AT3G46290	53.614	0.0	843

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Viun11g00903		Malectin_like	2.9e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00903	-		-	gmx:100809700	1539.24