Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00891 ATGGATTACGCAGAAGAAAATGCAATAGGTTTGGAGGACATCAATTTATTAGAAGAACATGGTGATAGTGGAACTATCTTGGACGAGGAAGGTATTGATAAGGAAGCCAATGAACAACAGGCTGTTGATGTCATTTCTCCGTGTGTTGGGATGTATTTTGACAGTGTTGATGACGTGAAGAAATTTTACAAAGAATACGGTATTAGAAGTGGTTTCGGGACAAGAATCAGAACTTCGAGAAAAGACAATGACAATCAACTATGTTACTTCAAATTAGTGTGTTCGCGGGAGGGAAAATGTGTCTCGTCCATACCACCTGAAATGAAGACACTGCCCACACAAAGAAAACAATGTCCTGCGCGCATTACTGTCGTTAGAAGAGAAGATAAGTGGATGATTAGCAGTGTGGTCCACGAACACAATCATGACGTAAGTCCATCGAAGTCTAGACTAATTCGTGGGAATAGGAAGTTGAATATGCAAGCCAAAAGAACCCTTGACATTAATGACGAAGCGGGTGTGCGTATTCACAAGAGCTTTCGTTCATTGGTGTGTGATGCAGGGGGGTTTGAGAACTTGGATTTTGTCGAAAGAGACGCAAGAAACTATATTGGTCAGCAACGTCGCGCATTAGGGAAGGAAGGTGACGGACAAGCTTTATTAAATCATTTTTCCAGTATGAGGGAGTTGAACAAAGACTTCTTTTTTGAAATTGATGTTGATGCAGATAATCGCATAAGCAATATATTTTGGGCAGACGGAAAGAGTCGGGCTGCATGTGTAGATTTTGGTGACATTGTGTCCTTCGACACCACATACTTAACTAATAAGTACGATATGCCTTTTGCACCATTCGTGGGTGTTAATCACCATGGTCAGTCAATCTTATTAGGGTGTGGGCTTTTATGTGCTGAAGATACTGGTACGTTTGTGTGGCTATTTCGAAGTTGGTTGCGATGCATGGGAAATAAAGCCGCTGAAGGAATTGTCACTGATCAATGCAGGGCGATGCAAAATGCCATTGAAATTGTCTTCCCCAACACCCGACATCGTTGGTGCCTTTGGCACATCATGAAAAAACTACCAGAAAAATTAGTGGGATATAGCCAATACAAGGAAATCAAGCATGGTGTAAAAGAATTGGTATATGAGTCAGATAGTGCTGAAGATTTTGAGAATGGGTGGGCAAAGTTCATTGAAAAGTATGATCTTCAACTTAATGAATGGCTTTACACTCTTTACGAAGAAAGACGTCGATGGGTTCCTTGTTATTTGAAATGTCATTTTTGGGTAGGCATGTCCACAACTCAGAGAAGTGAGGGAATGAATGCTTTCTTCGATGGGTTCATCAACTCTACTACAACACTCCAACAGTTTGTTGTCCAATATGACAATGCCCTTCGTTCTAAGGCGGAGAAAGAGTGTGAAGCAGATTTTGCTTCTACTAATACTACCCTTTCATGTGGGTCTCAGTCATTTATTGAGAGACAATTTCAAGATGAATACACTCATGCGAAGTTTAGTGAAGTGCAAAATGAGCTTAGGTGTAAGATGAATTGTAATATCAAAAGTGTTGAAGTTCATGGTTGTAAAGCAAAATATATTGTTAAAGAGGCGTTGATATGGAAAGACCAAAGTGCAGACAAATTTAATGAAGTTATATTTGATGTTGAGACAAAAGACATTGAATGCACTTGCCGCCTTTTTGAGTTTAGAGGAGTTATTTGCCGCCACAGCTTGATGGTCCTTGCCCAAGAGGAGGTAAAACTGGTTTCACAAAAGTATATTTTAAGTCAATGGAGCAAACGCATATTGCGAAGGCATACTTTGATAAGAGCATCATATTACACTAAGAAAGATGAACCCACTGTTCATAGGTATGACTTATTGTGTAAAAAGTTCTATGACATTGCTGAGTTTGCATGCCAAAGCGAGAGGGGTACAGAATTCTTGTGTTCCCAATTAGACTTATTATCAAGGAATCCTTTGTTATCTTGTTCCACAATATTAGGAAACTGTGAACAAACAAATGTGCAAATTTCTTCTCCAATAAATAGTGGTCCTCACCAAACAACAATCCGAAGTCCAATTCATGTTAAAAGAAAGGGTCGACCACGAGGTACAAGGATGCAATCAACGGTAGAGAAGATATGGAAAAAAAAGAAAAATGCAGCAGCTAGGAATAAAGCTTCTCGTAATGCCACTGATGGGGAACTACATACTTCAATTGCACCAGCTAATGAAATTTTGAATGCTCAAAGTGGTTCCACAACCAACATGGAACTAGTATTATCAAAAACGAAATTTTTTGGATCAATTGAGATGATCAACATGGCATTACCAAACACCTTTTGTTATTAG 2361 0.3931 MDYAEENAIGLEDINLLEEHGDSGTILDEEGIDKEANEQQAVDVISPCVGMYFDSVDDVKKFYKEYGIRSGFGTRIRTSRKDNDNQLCYFKLVCSREGKCVSSIPPEMKTLPTQRKQCPARITVVRREDKWMISSVVHEHNHDVSPSKSRLIRGNRKLNMQAKRTLDINDEAGVRIHKSFRSLVCDAGGFENLDFVERDARNYIGQQRRALGKEGDGQALLNHFSSMRELNKDFFFEIDVDADNRISNIFWADGKSRAACVDFGDIVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLCAEDTGTFVWLFRSWLRCMGNKAAEGIVTDQCRAMQNAIEIVFPNTRHRWCLWHIMKKLPEKLVGYSQYKEIKHGVKELVYESDSAEDFENGWAKFIEKYDLQLNEWLYTLYEERRRWVPCYLKCHFWVGMSTTQRSEGMNAFFDGFINSTTTLQQFVVQYDNALRSKAEKECEADFASTNTTLSCGSQSFIERQFQDEYTHAKFSEVQNELRCKMNCNIKSVEVHGCKAKYIVKEALIWKDQSADKFNEVIFDVETKDIECTCRLFEFRGVICRHSLMVLAQEEVKLVSQKYILSQWSKRILRRHTLIRASYYTKKDEPTVHRYDLLCKKFYDIAEFACQSERGTEFLCSQLDLLSRNPLLSCSTILGNCEQTNVQISSPINSGPHQTTIRSPIHVKRKGRPRGTRMQSTVEKIWKKKKNAAARNKASRNATDGELHTSIAPANEILNAQSGSTTNMELVLSKTKFFGSIEMINMALPNTFCY 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00891 786 SMART 26again6 562 589 IPR006564 GO:0008270
Viun11g00891 786 ProSiteProfiles Zinc finger SWIM-type profile. 555 587 IPR007527 GO:0008270
Viun11g00891 786 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 656 IPR031052 GO:0006355
Viun11g00891 786 Pfam FAR1 DNA-binding domain 61 145 IPR004330 -
Viun11g00891 786 Pfam SWIM zinc finger 560 583 IPR007527 GO:0008270
Viun11g00891 786 Pfam MULE transposase domain 266 360 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00891 Viun-Chr11 14088252 14090942 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun11g00891 MULE 1.7e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00891 - - vun:114180824 902.123