Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00867 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAACACAAGAAGATATTAGAAGGACTTCTTAAACTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAGGGCCCAAGATGGGCTAGTGTCAATCTTGGCATTTTTATATGCATGCAGTGTTCTGGAATACACAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCAGCAACTTTGGACACTTGGCTTCCAGAGCAGGTTGCATTCATTCAACATATGGGAAATGAGAAGGCAAACAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAAAGGCCCGTGGAAAGGGTTGGCCATAGTTATGCAGCTGTGTCTGAGAATACTTTTGAGGATAGGAAGAAAATCAAACCTTCAAATGCTATTCCTGGTACAAGAATTTGTGTTCCTGCTCCTCCCAAAGGGCCTGAACTGGTAACTCCCGTGGGAAAACCTCAACATGTTGATAAAGCAGAACCTGTTGCGCTACCACCACCACAAATTGAAACTTCAAAACAGACTACTGACACAACACAAAACTCCCCTCCAAAAGTTGACTTTTCTACGGATCTTTTTGACATGTTATCTATGGATGGTCCAAGTGAGAAGGGCTCAGGTGCAGCTGAAGCTATTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTACAGAGGCATTGCCAGCTCCGAAGAATGATACCACAAAATCAGTTGACAGTAGACCTCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACACACCTTCAGTTACAACAAGTTCAACTCCAGAAAACCCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATGTTGTGTCTCCATTTGCAATGCATCAACAGCAGCTAGCCATGCTGGCACAGCAACAGACTCTTCTAATGGCCGCTGCTGCTAAATCTGGTGGTGTGGATCCCAAGTACTTGGCCAGCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGCCGGTGGGGATTCCAAATACCCAGCTGGCATACAACAACCTGGATCCAATATTCCTGTCCAAAGTTGGCCAACTGCTGGCTACCCAATCCCGGGTATAATGCCCATGGGAAGTCAGGAAGACTTGCAAAAACTAATGCAAACAATGAACTTGACTGCAGCGCATTCAGCAGGGAGTTCAGTTCAGTATCCGCAATCTAGTTACTATGCTATGGGGCAAGTTGCTCCAGTTAATGGTTTGTCTACAACGTCTGGAGCAAGTAAACCTCAGGCAGTATCTCCGGTATCATCAGCATATCCAACATCAGCGCCCACTTCAAAGACAGGGAGCGATTATGATTTCTCCTCTTTAACACAAGGAATGTTTGCAAAGCACTGA 1512 0.4405 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQHMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKRPVERVGHSYAAVSENTFEDRKKIKPSNAIPGTRICVPAPPKGPELVTPVGKPQHVDKAEPVALPPPQIETSKQTTDTTQNSPPKVDFSTDLFDMLSMDGPSEKGSGAAEAIADDNNWAGFQSATEALPAPKNDTTKSVDSRPQSTSGIEDLFKDTPSVTTSSTPENPQKDVKNDIMSLFEKGNVVSPFAMHQQQLAMLAQQQTLLMAAAAKSGGVDPKYLASLQQQQSLLMAAAAAKSAGGDSKYPAGIQQPGSNIPVQSWPTAGYPIPGIMPMGSQEDLQKLMQTMNLTAAHSAGSSVQYPQSSYYAMGQVAPVNGLSTTSGASKPQAVSPVSSAYPTSAPTSKTGSDYDFSSLTQGMFAKH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00867 503 CDD ArfGap 19 117 - -
Viun11g00867 503 MobiDBLite consensus disorder prediction 265 310 - -
Viun11g00867 503 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 359 IPR044520 GO:0005096
Viun11g00867 503 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Viun11g00867 503 MobiDBLite consensus disorder prediction 207 224 - -
Viun11g00867 503 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Viun11g00867 503 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Viun11g00867 503 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Viun11g00867 503 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Viun11g00867 503 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Viun11g00867 503 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Viun11g00867 503 MobiDBLite consensus disorder prediction 459 488 - -
Viun11g00867 503 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Viun11g00867 503 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Viun11g00867 503 MobiDBLite consensus disorder prediction 171 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00867 Viun-Chr11 13433675 13445066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00867 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 2.41e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00867 K12486 - gmx:100807561 786.563