Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00858 ATGTCAATTGCTTGCATTCTACGTGATTTACTTCATGCAATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTAACTGAGAATGGTGATGTAAAGGTTGCTGATTTTGGAGTTTCTGCACAGTTAACAAGAACCATATCAAGGAGAAAGACCTTTGTAGGAACACCATTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAAAAGGCAGATATCTGGTCTTTGGGGATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTTCATCCAATGAGAGTGCTTTTTATCATACCACGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGAGACCAAGTGCTAAAGAGCTTCTTAGACATCGTTTCATTCGGAACGCCAGGAAGAGTCCTAAGCTATTGGAGAGAATAAGGGAGCGTCCAAAGTTTCAAATAAAGGAAGATGAGGCAACACCCAGAAATGCCCCAAAGGGGGTGGGCGAGGCATATGATACTGTTAAGGTTGCGAAAGATTTAAGGGTTGATGAGACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTAGTGGATCTCAGGGTACTGGAACCTTTCGTAGTGTGTCACGACCACCTCAATTTAGAGACAAGAAAACTGAAGTTTCAAATCATCAGCTTACCCAAAAAAAAAGTCCAGAGAGTGGCTATCAGGGGGGATCTGGCAATAAAAGTGAGTTGCTAGAGGCTTCTTTTGGAAAAGATTCAGGAGTTCCCTACCATGATGAACATCTGGATAATCATCTTGAAGATCAGGATGAATTGTTTGGGAATGGATTAGGAACTGTTGTTGTTCGGTCTCCAAAAGGACCACAGTCATCACTGTTTCGTGACCAAAGTTCCCGCTCTAGCAGCAGCTATGCTTCTTTTGAAGACGTTTCTACAAGCGGAACTGTTGTTTTGCGTAATCAGCACGATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTTGGACTTAATAGCAGAAATTCAAATGCCTCATTTGAAGATAGTGCTACAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGTGGATTGAAGAAAATGAATGTCCGGGATAGATTTGCACTGGGAAAACTCAACAATGATGTACAAGAAAGCAGGAGAGATCAAATGTCAACCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATTGATGCACAAAAGGGGATTTCAAGATCACAGAATGATATTGATGATGAAGAAAGTGCCAAAATAATCTCATCATCTGCGCCGTTATCTGTTTTGCTTATTCCATCATTAAAAGAGGCCATTGCTGAGGATCCAGAAGGGCCAATTGTGCAAATTGTTATCAATGCTCTTTTGAACATGGAGAAGACAAAGCCCCAATCCTGTGATGCTCTTGTCAAAAACTTGCTTCAACGGTTGGCAAGTTCAAAGGAATTATCATTGAAGGACCTGCAAGAACTGGCTGGCCGATTACTCAGCAAGACTAAGTCAGCTGAAGAAGCCCGAAATGCAGAGACAGATCTCAAGAAGAAACAGAACAAGGAAGTTCATTCAAATAGCAATTTGAGTCCCCTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAGCTTCACGGGATCTAAATTCATCTTGA 1767 0.4182 MSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKFQIKEDEATPRNAPKGVGEAYDTVKVAKDLRVDETNQPSGQGKTLKSSGWDFSISGSQGTGTFRSVSRPPQFRDKKTEVSNHQLTQKKSPESGYQGGSGNKSELLEASFGKDSGVPYHDEHLDNHLEDQDELFGNGLGTVVVRSPKGPQSSLFRDQSSRSSSSYASFEDVSTSGTVVLRNQHDDSDSPQTPRSRLGLNSRNSNASFEDSATNLAEAKAAIQGGLKKMNVRDRFALGKLNNDVQESRRDQMSTSSDSSRPSREYIDAQKGISRSQNDIDDEESAKIISSSAPLSVLLIPSLKEAIAEDPEGPIVQIVINALLNMEKTKPQSCDALVKNLLQRLASSKELSLKDLQELAGRLLSKTKSAEEARNAETDLKKKQNKEVHSNSNLSPLARFLLSRWQGQASRDLNSS 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00858 588 Coils Coil 525 558 - -
Viun11g00858 588 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00858 588 SUPERFAMILY Protein kinase-like (PK-like) 3 186 IPR011009 -
Viun11g00858 588 MobiDBLite consensus disorder prediction 258 277 - -
Viun11g00858 588 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 2 544 - -
Viun11g00858 588 Pfam Protein kinase domain 6 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00858 588 MobiDBLite consensus disorder prediction 319 383 - -
Viun11g00858 588 MobiDBLite consensus disorder prediction 420 435 - -
Viun11g00858 588 MobiDBLite consensus disorder prediction 209 242 - -
Viun11g00858 588 MobiDBLite consensus disorder prediction 413 457 - -
Viun11g00858 588 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00858 588 MobiDBLite consensus disorder prediction 539 564 - -
Viun11g00858 588 MobiDBLite consensus disorder prediction 205 279 - -
Viun11g00858 588 FunFam Serine/threonine-protein kinase PAK 6 1 177 - -
Viun11g00858 588 MobiDBLite consensus disorder prediction 539 560 - -
Viun11g00858 588 MobiDBLite consensus disorder prediction 313 383 - -
Viun11g00858 588 Gene3D Transferase(Phosphotransferase) domain 1 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00858 Viun-Chr11 13259654 13281723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00858 2 585 MAP Kinase Kinase Kinase Kinase AT3G15220 60.406 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Viun11g00858 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00858 K08838 - gmx:100786501 992.26