Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00855 ATGGCTGACATAGCGGGTCTGGCTGAGGCTGCAGGGGCAAGATTTAGCTCATTGGAGCTTATTGGGCAGGGGTCATTCGGCGACGTGTATAAAGGGTTTGACAAGGAGCTAAACAAGGAAGTTGCTATCAAAATGATTGATTTGGAAGAATCAGAGGATGAAATAGAGGACATTCAGAAGGAAATTTCTGTACTGTCACAATGTAGATCAGCGTACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTGCAATCAGGTCCCCCACTTGATGAAATGTCAATTGCTTGCATTCTACGTGATTTACTTCATGCAATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTAACTGAGAATGGTGATGTAAAGGTTGCTGATTTTGGAGTTTCTGCACAGTTAACAAGAACCATATCAAGGAGAAAGACCTTTGTAGGAACACCATTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAAAAGGCAGATATCTGGTCTTTGGGGATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTTCATCCAATGAGAGTGCTTTTTATCATACCACGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGAGACCAAGTGCTAAAGAGCTTCTTAGACATCGTTTCATTCGGAACGCCAGGAAGAGTCCTAAGCTATTGGAGAGAATAAGGGAGCGTCCAAAGTTTCAAATAAAGGAAGATGAGGCAACACCCAGAAATGCCCCAAAGGGGGTGGGCGAGGCATATGATACTGTTAAGGTTGCGAAAGATTTAAGGGTTGATGAGACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTAGTGGATCTCAGGGTACTGGAACCTTTCGTAGTGTGTCACGACCACCTCAATTTAGAGACAAGAAAACTGAAGTTTCAAATCATCAGCTTACCCAAAAAAAAAGTCCAGAGAGTGGCTATCAGGGGGGATCTGGCAATAAAAGTGAGTTGCTAGAGGCTTCTTTTGGAAAAGATTCAGGAGTTCCCTACCATGATGAACATCTGGATAATCATCTTGAAGATGATGAATTGTTTGGGAATGGATTAGGAACTGTTGTTGTTCGGTCTCCAAAAGGACCACAGTCATCACTGTTTCGTGACCAAAGTTCCCGCTCTAGCAGCAGCTATGCTTCTTTTGAAGACGTTTCTACAAGCGGAACTGTTGTTTTGCGTAATCAGCACGATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTTGGACTTAATAGCAGAAATTCAAATGCCTCATTTGAAGATAGTGCTACAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGTGGATTGAAGAAAATGAATGTCCGGGATAGATTTGCACTGGGAAAACTCAACAATGATGTACAAGAAAGCAGGAGAGATCAAATGTCAACCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATTGATGCACAAAAGGGGATTTCAAGATCACAGAATGATATTGATGATGAAGAAAGTGCCAAAATAATCTCATCATCTGCGCCGTTATCTGTTTTGCTTATTCCATCATTAAAAGAGGCCATTGCTGAGGATCCAGAAGGGCCAATTGTGCAAATTGTTATCAATGCTCTTTTGAACATGGAGAAGACAAAGCCCCAATCCTGTGATGCTCTTGTCAAAAACTTGCTTCAACGGTTGGCAAGTTCAAAGGAATTATCATTGAAGGACCTGCAAGAACTGGCTGGCCGATTACTCAGCAAGACTAAGTCAGCTGAAGAAGCCCGAAATGCAGAGACAGATCTCAAGAAGAAACAGAACAAGGAAGTTCATTCAAATAGCAATTTGAGTCCCCTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAGCTTCACGGGATCTAAATTCATCTTGA 2094 0.4193 MADIAGLAEAAGARFSSLELIGQGSFGDVYKGFDKELNKEVAIKMIDLEESEDEIEDIQKEISVLSQCRSAYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKFQIKEDEATPRNAPKGVGEAYDTVKVAKDLRVDETNQPSGQGKTLKSSGWDFSISGSQGTGTFRSVSRPPQFRDKKTEVSNHQLTQKKSPESGYQGGSGNKSELLEASFGKDSGVPYHDEHLDNHLEDDELFGNGLGTVVVRSPKGPQSSLFRDQSSRSSSSYASFEDVSTSGTVVLRNQHDDSDSPQTPRSRLGLNSRNSNASFEDSATNLAEAKAAIQGGLKKMNVRDRFALGKLNNDVQESRRDQMSTSSDSSRPSREYIDAQKGISRSQNDIDDEESAKIISSSAPLSVLLIPSLKEAIAEDPEGPIVQIVINALLNMEKTKPQSCDALVKNLLQRLASSKELSLKDLQELAGRLLSKTKSAEEARNAETDLKKKQNKEVHSNSNLSPLARFLLSRWQGQASRDLNSS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00855 697 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 653 - -
Viun11g00855 697 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
Viun11g00855 697 Coils Coil 634 667 - -
Viun11g00855 697 MobiDBLite consensus disorder prediction 315 389 - -
Viun11g00855 697 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Viun11g00855 697 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00855 697 MobiDBLite consensus disorder prediction 529 544 - -
Viun11g00855 697 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00855 697 MobiDBLite consensus disorder prediction 428 492 - -
Viun11g00855 697 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Viun11g00855 697 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00855 697 MobiDBLite consensus disorder prediction 368 387 - -
Viun11g00855 697 MobiDBLite consensus disorder prediction 648 673 - -
Viun11g00855 697 Coils Coil 41 68 - -
Viun11g00855 697 MobiDBLite consensus disorder prediction 648 669 - -
Viun11g00855 697 MobiDBLite consensus disorder prediction 422 492 - -
Viun11g00855 697 CDD STKc_MST3_like 14 287 - -
Viun11g00855 697 MobiDBLite consensus disorder prediction 319 352 - -
Viun11g00855 697 SUPERFAMILY Protein kinase-like (PK-like) 14 296 IPR011009 -
Viun11g00855 697 MobiDBLite consensus disorder prediction 522 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00855 Viun-Chr11 13259654 13283555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00855 1 694 MAP Kinase Kinase Kinase Kinase AT3G15220 64.286 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Viun11g00855 Pkinase 6.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00855 K08838 - gmx:100786501 1178.31