Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00836 ATGGCTCCCAGTGACAACAGATCCAACGACGTATCCGGGTCCAATTCGACCCGCTTGAACAAAGAGATCCGATACCGCGGGGTCAGGAAGAGACCGTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGGAAGAAAACACGCGTCTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCGCGTGCGTATGATGCGGCGGCGCGTGATTTCCGTGGCGCGAAGGCGAAGACAAATTTTCCCACACACGCGGAACTTACCCACGTGGCGCGTAGCCCCAGCCAGAGCAGCACCCTCGAGTCCCCCTCTCCGCCGCCGCCGCCGCCGCTTGACCTCACTCTCACCCCAATCGCCGCCACCGGGGCGTTCGTCTTCCCCGTCGCCCGCCCCGTGGTTTTCTTCGACGCGTTCGCCCGTGCGGAGGTGCGGGCTTTTGATCTTCCCGTTACCGCCTTCCGCCGCACCGCCGTCGCCGCCACCACGCAGAGTGATTCCGACTCGTCCTCCGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTGTTGGATCTTGACCTTAATGTTCCTCCTCCGCCCGAGGTTGCATGA 588 0.6497 MAPSDNRSNDVSGSNSTRLNKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTHAELTHVARSPSQSSTLESPSPPPPPPLDLTLTPIAATGAFVFPVARPVVFFDAFARAEVRAFDLPVTAFRRTAVAATTQSDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00836 195 MobiDBLite consensus disorder prediction 89 110 - -
Viun11g00836 195 MobiDBLite consensus disorder prediction 1 21 - -
Viun11g00836 195 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Viun11g00836 195 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Viun11g00836 195 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Viun11g00836 195 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Viun11g00836 195 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Viun11g00836 195 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Viun11g00836 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 173 - -
Viun11g00836 195 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Viun11g00836 195 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Viun11g00836 195 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Viun11g00836 195 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00836 Viun-Chr11 12870898 12871815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00836 10 162 AP2-EREBP Transcription Factor Family AT3G15210 58.960 6.76e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g00836 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00836 K09286 - gmx:100785455 211.075