Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00805 ATGACTTGTTTCTTTAATCTTTTCAGAAAGAAAGGATCTTCCTCAGCCACTCGATTGACCGGAGTTGATTTAGATATTTCAGAAATTCAGAATGTCAAGATCTACACTTACAGGGAATTGCGAAGTGCCACCGAAAGTTTTAGTCCTGCAAACAAGATAGGACAGGGAGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCCAGTAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGGTCCGAGAGTTTTTGACAGAAATAAAGGTGATATCTAGTATAGAACATGAGAATCTAGTTAAGTTGCATGGATGCTGTGTGGAAGACAACCATAGGATTTTGGTCTATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTATTGGTGCAGGCCACAGTAACATCCAATTCAGTTGGTCTACAAGAAGGAACATTTGTGTAGGTGTTGCCAGGGGCCTTGCATTCCTTCATGAAGAGGTCCAACCCCACATTATCCACAGAGACATAAAAGCAAGCAATGTCCTACTTGACAAAGATCTTGAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATTCCACCAAACCTAACTCATATCAGTACACGTGTTGCTGGAACAGTTGGTTATCTTGCACCTGAATATGCAATCCGAAATCAAGTGACAAGAAAATCAGATGTTTATAGCTTTGGAGTTCTATTATTAGAAATTGTTAGTGGAAGACCTAACACAAATAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGAGCTTGGGATTTGTATGACGCTGGAGAGACAGAAAAAATGGTGGATGCTTTTCTAGACGGAGACTTCGATGTTGAGGAGGCAATCAGGTTTTGTAAGATTGCTCTCCTTTGCACGCAGGATTCACCTCAGCTCCGACCCTCTATGTCCATTGTGCTTGAAATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCATGGAAACAAAAGGGCAAGTCTGAAGAGAATGGTAAATTTTTGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCAGAAACCATGACCTCTTTTGCTACCATGACCTTCACAGCAATCTGTGATCGAAGTAATTAA 1170 0.4043 MTCFFNLFRKKGSSSATRLTGVDLDISEIQNVKIYTYRELRSATESFSPANKIGQGGFGEVYKGKLRNGSPVAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGAGHSNIQFSWSTRRNICVGVARGLAFLHEEVQPHIIHRDIKASNVLLDKDLEPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWDLYDAGETEKMVDAFLDGDFDVEEAIRFCKIALLCTQDSPQLRPSMSIVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAWKQKGKSEENGKFLLAEGKQDESSSSETMTSFATMTFTAICDRSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00805 389 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00805 389 Gene3D Phosphorylase Kinase; domain 1 22 122 - -
Viun11g00805 389 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 365 - -
Viun11g00805 389 FunFam cold-responsive protein kinase 1 19 122 - -
Viun11g00805 389 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Viun11g00805 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Viun11g00805 389 CDD STKc_IRAK 53 318 - -
Viun11g00805 389 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00805 389 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Viun11g00805 389 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00805 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Viun11g00805 389 FunFam cold-responsive protein kinase 1 123 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00805 Viun-Chr11 11518067 11521970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00805 35 335 Receptor kinase-like Gene Family AT1G56120 54.817 2.33e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00805 Pkinase 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00805 - - gmx:100801735 671.389