Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00784 ATGTCACATTATGGGAAACCCGTGTCCGAGTTAGGGCTCAGCGAGCGGTTGCGCGACTCACTGAGTTGCTCTGACGATACCAACAAGCCCGATTTCAGAGAACTCGATTTGGGGTCGCCGGTTTCCACATTGCGGCCACGCCAGCACTTCCACCACCACAGTGCGCCGACCACGAGTAGTAACAGTAGCAGTAGTGGCGGCTCGACCGGGTCGGTTCCGGGTCGGAGCAACCCGGTTTCGGGGAGATCCCATTCCGGCGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTGTCCAAACCGGGTCACCGGAGATCTAATTCTGGTCAGAGTTTGAGTCAGAGTCAGAGATCCCCGTCGTCGTCCTCGGCTGCCGTGAATTCGCCGCCGCTGAATGTTCTCCCGGCCGGGAACATTTGCCCGTCGGGGAGGGTTCTCAAGGCGGCGACGGTGGCTGCAGCGGCGAGCCGGAGCTCCAGGAGTGATGTCTTGGGGTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGTGGCGGCAAGGGTGGTGGGGGGAATAGCGGTGGTGGTGATGCGACGAGTGTTAAGATCGGCGGCGGCGATTCGGGGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTACAAGAGAGGGCACTTTGGTGAGGCGTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGAGCAATGCCGCTTACCGGAGCAACCGGGCGGCAGCATTGACCGGATTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACCCTGTTTTTAAGGTTAGGACAGGTTGAGGATGCAAGGAAGCACCTTTGTTATCCTGGGCTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTAGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTATTGCTGCCGGGGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTGAAGCTACACCAGATGGATGGTGCTGAATCGTGTTTATCAGGGATTCCCAAAAGCGAGCCGCGTCCCAGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCTGAGGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATAGACCCCAGAAATGTTGAAGTTGCTGTTTTGCTCAAGAATGTGAGGATGGTGGCTCGAGCTAGACTGCGTGGCAATGATCTTTTCAAATCAGAAAGGTTCACCGAGGCGTGCTCGGCATATGGAGAAGGTCTGAGGCTAGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGTTAGAAAGATGGGAAGAAGCAGTGAAGGATTATGAACTTTTGCGGAGAGAATTGCCAGATGACAATGATGTTGCCGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAATCTCGTGGGGAAGAAGTACGTAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTTGCAATGTAAGCAGATATCTCCTTTTGTGGTTACACTGTGCAGTCGCTATCCGTCTATCAACTTTCTTAAGGTGGATATTCAAGCAAGCCCTGCAGTTGCCACTGCTGAGAATGTGAGAGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTGTATGTCCTAGTCATGATATGTTGGAACACTCTATTAGGCATTACAGCTTGTAG 2049 0.5115 MSHYGKPVSELGLSERLRDSLSCSDDTNKPDFRELDLGSPVSTLRPRQHFHHHSAPTTSSNSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSLSQSQRSPSSSSAAVNSPPLNVLPAGNICPSGRVLKAATVAAAASRSSRSDVLGSGTGNYGHGSIMRGGKGGGGNSGGGDATSVKIGGGDSGKRVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPSNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAIAAGADSCVQLFMCRAEALLKLHQMDGAESCLSGIPKSEPRPSSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNDVAENLFHAQVALKKSRGEEVRNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPFVVTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIVCPSHDMLEHSIRHYSL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00784 682 Gene3D Tetratricopeptide repeat domain 208 568 IPR011990 GO:0005515
Viun11g00784 682 MobiDBLite consensus disorder prediction 1 133 - -
Viun11g00784 682 CDD TRX_family 587 668 - -
Viun11g00784 682 MobiDBLite consensus disorder prediction 156 213 - -
Viun11g00784 682 FunFam TPR repeat-containing thioredoxin TTL4 574 681 - -
Viun11g00784 682 MobiDBLite consensus disorder prediction 53 131 - -
Viun11g00784 682 SMART tpr_5 402 435 IPR019734 GO:0005515
Viun11g00784 682 SMART tpr_5 210 243 IPR019734 GO:0005515
Viun11g00784 682 SMART tpr_5 244 277 IPR019734 GO:0005515
Viun11g00784 682 SMART tpr_5 516 549 IPR019734 GO:0005515
Viun11g00784 682 SMART tpr_5 482 515 IPR019734 GO:0005515
Viun11g00784 682 SMART tpr_5 448 481 IPR019734 GO:0005515
Viun11g00784 682 Coils Coil 522 542 - -
Viun11g00784 682 Pfam Tetratricopeptide repeat 216 276 - -
Viun11g00784 682 Pfam Tetratricopeptide repeat 484 515 IPR001440 GO:0005515
Viun11g00784 682 Pfam Thioredoxin 589 676 IPR013766 -
Viun11g00784 682 SUPERFAMILY Thioredoxin-like 485 680 IPR036249 -
Viun11g00784 682 MobiDBLite consensus disorder prediction 156 170 - -
Viun11g00784 682 Gene3D Glutaredoxin 575 681 - -
Viun11g00784 682 MobiDBLite consensus disorder prediction 19 33 - -
Viun11g00784 682 SUPERFAMILY TPR-like 210 438 IPR011990 GO:0005515
Viun11g00784 682 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Viun11g00784 682 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Viun11g00784 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 679 IPR044534 -
Viun11g00784 682 ProSiteProfiles TPR repeat profile. 210 243 IPR019734 GO:0005515
Viun11g00784 682 Pfam Tetratricopeptide repeat 404 435 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00784 Viun-Chr11 11161858 11165985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00784 447 592 U-box Gene Family AT3G07370 28.415 8.67e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00784 - - gmx:100805790 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g00784 11 11161858 11165985 Viun11g00784 11 11161858 11165985 ECH
Viun11g00784 11 11161858 11165985 Viun5g02842 5 39967005 39970122 PCT