Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00724 ATGGGTCGCCCACCCAGTAATGGAGGCCCAGCCTTTCGCTTCACTCCGGCCGAGGTAGGAGAAATGGAAACTATTCTTCAAGAACATGACAATGCAATGCCAGCACGGGAAATTCTTACAGCTCTTGCAGAAAAGTTCAGTGAATCACCAGATCGTAAAGGCAAGATTACAGTGCAAATGAAACAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCAATAAGAGCAAAATCAAGTAAGACTCCTGGAAAGTTAAATATTACACCTATGCCTCGGGATGATGCAACCCCTGTAAGGACTATGCCTCAACAACCAACAGCTGCTCCAATTCCTACTGCTTCTGTTACAGCAGTTTTGCCAGCAGTAAAAGCAACTCCAGAAAATCCTGTAATGGAATTCGAAGCTAAATCTGGAAGAGATGGAGCATGGTACGATGTTGCTACCTTTCTATCGCATAGATATTTGGAGAGCCATGATCCGGAAGTTCTGGTACGATTTGCTGGTTTTGGGCCTGAGGAAGATGAGTGGATTAACATTCGAAGGCATGTCAGACCACGCTCTTTGCCATGTGAATCATCAGAATGTGTTGTAGTAATCCCGGGTGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTATACTTTGATGCCCATGTGCTTGATGCTCAAAGACGAAGGCATGATGTAAGAGGTTGTCGTTGTAGATTTTTGGTTCGCTATGATCATGATCAATCAGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGCCGGCCAGAAACCGACTACCGGTTACAGCAACTTCATGCCATTGTGAATGAGTTGACATCTGTGGATCAGCAGAAGACTGGCATGGACCCATCAGTGCCAAAGCAGCTGATTGCAGCAAGCATTCATATGGAGATTCCTGTTGTGCAAACAAATGTTCCTCAAACTCCTCAAGGTATGGATATGGATGTAGATCAAAAGAAAGCTGAAACAATCACTGATGTTCCTGCAGGAAACTCTACCACCAACCCTGGCAATGCCCCATTCACTACTATCATTACTACAAGCAGTGTTCCTCAAGTCACTACTCAGACTCAGGACATGGTTGAATGA 1104 0.4457 MGRPPSNGGPAFRFTPAEVGEMETILQEHDNAMPAREILTALAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDATPVRTMPQQPTAAPIPTASVTAVLPAVKATPENPVMEFEAKSGRDGAWYDVATFLSHRYLESHDPEVLVRFAGFGPEEDEWINIRRHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAIVNELTSVDQQKTGMDPSVPKQLIAASIHMEIPVVQTNVPQTPQGMDMDVDQKKAETITDVPAGNSTTNPGNAPFTTIITTSSVPQVTTQTQDMVE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00724 367 Gene3D - 190 262 - -
Viun11g00724 367 Gene3D - 10 84 - -
Viun11g00724 367 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Viun11g00724 367 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Viun11g00724 367 Gene3D - 129 189 - -
Viun11g00724 367 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 330 IPR039276 -
Viun11g00724 367 SMART HOX_1 7 81 IPR001356 GO:0003677
Viun11g00724 367 CDD homeodomain 13 75 IPR001356 GO:0003677
Viun11g00724 367 MobiDBLite consensus disorder prediction 81 109 - -
Viun11g00724 367 Pfam SAWADEE domain 131 257 IPR032001 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00724 Viun-Chr11 9238121 9252663 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun11g00724 SAWADEE 1.3e-39 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00724 - - gmx:100783895 597.045