Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00721 ATGTCCCGTTGCATCCAAATACAAACAAAATCCATGCCAGCATCGAAACCTGTGCTCAAACAACACATGATGGAGCAGAACAACAGAGTTCCAAGAATTCATGAATTCTCTTCACCACCTTCCCCTCCCTTTTTTTCCTGCATCGTTGCTCTTTCCATCGCAGCACTGATTTTCATGTTCTTCTACGTTTTCTCACCCATTGTTTCTGCAGCCATTCTTCTTCTCCTTTGCGTCACCACCCTCTTCCTTTGCAGGTTCACACAAACATTCTCTTTTCATGCACACACCCCACCCAAAAACCACAGGGTCGTCAAAATTTTCAATAACCTTTTCTGGGTCGTTGAAGAGAAAAGAAGGGGCCAAACGCAACAAGTAAAGAAGCTTCTCGGATCTATCGTATGCTTCGGAAACCAAACATTGCTTTCAGGGAGTGAATGTGCGATTTGCTTGGAAGAGTTCAAGAATGGAGAAGAGTGTGTTGTGTTTTCAGTTTGTGGGCACATTTTTCATTGTGATTGTATCAAACACTGGTTAGAGGAAAAACCCACTTGTCCAAATTGTCGTCTCTGTGTGGCATCTTCAGCCACCGTCTTCAGAAGAAGAAGCATAGAGTTTTCGGAAGATTTAGTGTAA 633 0.4313 MSRCIQIQTKSMPASKPVLKQHMMEQNNRVPRIHEFSSPPSPPFFSCIVALSIAALIFMFFYVFSPIVSAAILLLLCVTTLFLCRFTQTFSFHAHTPPKNHRVVKIFNNLFWVVEEKRRGQTQQVKKLLGSIVCFGNQTLLSGSECAICLEEFKNGEECVVFSVCGHIFHCDCIKHWLEEKPTCPNCRLCVASSATVFRRRSIEFSEDLV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00721 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 196 - -
Viun11g00721 210 SUPERFAMILY RING/U-box 138 193 - -
Viun11g00721 210 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Viun11g00721 210 CDD RING-H2_PA-TM-RING 145 188 - -
Viun11g00721 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 201 IPR013083 -
Viun11g00721 210 SMART ring_2 146 187 IPR001841 -
Viun11g00721 210 Pfam Ring finger domain 145 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00721 Viun-Chr11 9155364 9156293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00721 28 188 C3H Transcription Factor Family AT2G17450 29.878 5.52e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00721 - - vra:111240582 305.064