Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00719 ATGGAATCTAAACACTTTGACTCCAATGGGGAAGTCTCTCTAAAGCAAAAATCAAAATCCATTTCAGCTGAGCCAACAGTCTCTACTTGTGAAAATGATTGCTTTGATTGCAATATTTGTATGGAAGCAGCATATGACCCTGTGGTTACACTCTGTGGTCATCTTTACTGTTGGCCATGCATATACAAGTGGCTGCATCTTCAAAACTCATCTGTTGAACAAGATAAGCAGCAGACATGCCCAGTTTGTAAATCTCAGATCTCTGACACCTCAGTAGTCCCTCTCTATGGCCGTGGAACATCAAATTCAGAATCAAAAGCCAAGAAACTCCAAATGAGTCTTGGAATACCTCACAGGCCACCTCCTTACAACTTGAATGATATGTTAACTTCTTCTGCTCCTGCACCAGCACATTCTGGCCACCAAATTCGTCCAAGTTATTTCCAGTCACAGCCAAGACCATTCCATTATCAGCAGTACTTCCCTCACCTCTATGAAAGCTATGGCACTAATGGATTGCCTTATCTTGGAGGTGCTGCCATGACTAGTTTCTTTAATCCTATGATTGGTATGTTTGGTGAGATGGTCTTGACAAGAATTTTTGGGGTGTCTGATGCAAACTTGTTTCCATACCCTCATAGTGGAAATGGCAGTCCCAGAATGAGAAGGCAAGAAATGCACATTGACAAGTCTCTGAACAGACTTTCCATCTTTCTCCTATGTTGTATCATTTTGTGTCTTCTATTGTTCTGA 753 0.4157 MESKHFDSNGEVSLKQKSKSISAEPTVSTCENDCFDCNICMEAAYDPVVTLCGHLYCWPCIYKWLHLQNSSVEQDKQQTCPVCKSQISDTSVVPLYGRGTSNSESKAKKLQMSLGIPHRPPPYNLNDMLTSSAPAPAHSGHQIRPSYFQSQPRPFHYQQYFPHLYESYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFPYPHSGNGSPRMRRQEMHIDKSLNRLSIFLLCCIILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00719 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 69 - -
Viun11g00719 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Viun11g00719 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 129 IPR013083 -
Viun11g00719 250 SUPERFAMILY RING/U-box 33 96 - -
Viun11g00719 250 SMART ring_2 37 83 IPR001841 -
Viun11g00719 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Viun11g00719 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00719 Viun-Chr11 9078771 9080940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00719 2 236 C3H Transcription Factor Family AT4G27470 43.333 5.52e-55 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00719 K10666 - gmx:100817526 379.407