Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00702 ATGGGGGATCTCATCTTCTCCTTCAAGACCCAGGAGCATGGTCAGCAGAGGGCAAAGCACAACAAGAAGAGGTTAACCGAGGAGCAGGTTACGATCCTCGAGAAATGCTTTTCTTCCAACATGAAGCTGGAGCCGGAGCAGAAGTTCCACCTCGCAAACCAACTCGGTGTTCCTCCGAGACAAGTTGCTATCTGGTACCAGAACAAAAGGGCTCGCTGGAAGACTCAGAACCTTGAGGTGGACCACGGTGTTCTTCAGGCAAAGCTTGAGAATGTGATGGCGGAAAAGAAGCAGCTGGAGAAAGACGTGGAAAGGCTCAAAGCTGAGCTCAAGAAAGCCCAAGAGATGCTGCTAATTGGTGATGTGGTGAAAGGTGGAAAAAATAGTAATTATAACAGTGGTAACAATAATAATAATAATAAGAATAATAATGGTTCTTGCTGTGAGTTTTCAACTTCTTTTGAAGAGGGAGGGAATTCAGGTGTGGTGCTTGATGATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAACTCTATGCTTACTTCATGGGTGCAAATTATGGGTCAGGTTTGCATGAGAAAAGGGCGTAA 600 0.4567 MGDLIFSFKTQEHGQQRAKHNKKRLTEEQVTILEKCFSSNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQNLEVDHGVLQAKLENVMAEKKQLEKDVERLKAELKKAQEMLLIGDVVKGGKNSNYNSGNNNNNNKNNNGSCCEFSTSFEEGGNSGVVLDDHECWQSGEVMQVEELYAYFMGANYGSGLHEKRA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00702 199 Pfam Homeodomain 21 74 IPR001356 GO:0003677
Viun11g00702 199 Coils Coil 82 116 - -
Viun11g00702 199 SMART HOX_1 18 80 IPR001356 GO:0003677
Viun11g00702 199 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Viun11g00702 199 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Viun11g00702 199 FunFam Homeobox-leucine zipper protein ATHB-52 12 78 - -
Viun11g00702 199 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 142 IPR045224 GO:0003700
Viun11g00702 199 CDD homeodomain 19 77 IPR001356 GO:0003677
Viun11g00702 199 Gene3D - 12 80 - -
Viun11g00702 199 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00702 Viun-Chr11 8721842 8722628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00702 12 193 Homeobox Transcription Factor Family AT5G53980 42.308 3.30e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun11g00702 Homeodomain 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00702 - - ccaj:109788811 303.908