Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00687 ATGAATACACCAGTAGTGAGAAGAGGCTCAAGGAGATCTATGATGGAATTTCCTCCATTGTGTGGCCCTCACAGTGATATGATTGTGGACACCGAAGACATGTCATATGAGACATTCTCTTCTCCTGAGCTTCTTGAGTTAGGTGAATGGATTGGAAATGACAACTTGGAAAGGGGTTTGCCCAAAGAAAGTATTGCAAGACAGTTGCAAACAAAAACTTATCTATTACCTAATGACTTGGAGGGGTCAACTTCTGAGGAACGACAAATTGATATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATAGGAATTCTTCAATGTGGACATGAATACCACACAGACTGTATAAGGAGATGGTTAGATGAGAAAAATGTTTGTCCCATCTGCAAATCGAAAGCATTGTCTATTACATAG 426 0.385 MNTPVVRRGSRRSMMEFPPLCGPHSDMIVDTEDMSYETFSSPELLELGEWIGNDNLERGLPKESIARQLQTKTYLLPNDLEGSTSEERQIDICIICQDEYKNKEEIGILQCGHEYHTDCIRRWLDEKNVCPICKSKALSIT 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00687 141 SMART ring_2 93 133 IPR001841 -
Viun11g00687 141 Pfam Ring finger domain 92 134 IPR001841 -
Viun11g00687 141 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Viun11g00687 141 SUPERFAMILY RING/U-box 92 138 - -
Viun11g00687 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 139 IPR013083 -
Viun11g00687 141 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 20 139 IPR045191 GO:0061630
Viun11g00687 141 CDD RING-H2_RNF24-like 91 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00687 Viun-Chr11 8577262 8578274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00687 24 138 C3H Transcription Factor Family AT2G15530 40.870 5.75e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00687 K19041 - var:108324602 177.948