Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00683 ATGGTAATGGTCATCGAATCCTTTGGATATAGACCTTCTCCTCGGGATTGGTCTAATCTCTTTTTCAAAAAGTCAATTTACAAACAGAATGTGGATTTTCAAACAGAGGCCCTTTACATGGAATTTCCTCCATTGGATGACCCTCAGAGTGATATCCTCATGAACATTGTAGACATGTCATATCAGGCATTCTCTCGTCCTATGCATGAACCTTCTTCGCTGGTTGATCCTCAAAGTGATATGAGCATGGACATTGACAACTTGTCATATGAGGAGCTTCTTGAGTTAGGTGAACGAAATGGGAATGACAACTTAGAAAAGGGTTTGCTAAAAGACATTACTGGAAGACAATTGCGGACAAAAATGTTTCTATTACCTAATGACTTGGAGGAGTCAACTTCTGAAAAATGGGAGACTGATATTTGCATAATATGTCAGGATGAATATAAGAACAGAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAAATTGTATAAGAAGATGGTTACATGAGAAAAATATTTGTCCTATCTGCAAATCAAAAGCATTGAATATTGAATAG 573 0.3735 MVMVIESFGYRPSPRDWSNLFFKKSIYKQNVDFQTEALYMEFPPLDDPQSDILMNIVDMSYQAFSRPMHEPSSLVDPQSDMSMDIDNLSYEELLELGERNGNDNLEKGLLKDITGRQLRTKMFLLPNDLEESTSEKWETDICIICQDEYKNREEIGILQCGHEYHANCIRRWLHEKNICPICKSKALNIE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00683 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 187 IPR013083 -
Viun11g00683 190 SMART ring_2 142 182 IPR001841 -
Viun11g00683 190 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Viun11g00683 190 CDD RING-H2_RNF24-like 140 186 - -
Viun11g00683 190 SUPERFAMILY RING/U-box 141 186 - -
Viun11g00683 190 Pfam Ring finger domain 141 183 IPR001841 -
Viun11g00683 190 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 187 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00683 Viun-Chr11 8505362 8516877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00683 76 187 C3H Transcription Factor Family AT2G15530 39.286 2.48e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00683 K19041 - var:108324602 171.014