Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00680 ATGGCAGTGAGAGGACTGACCATAGATTCCCATTTTATAGTTGATAGTGATGAGAATGGGATGGTGTATGGAATGACACAACACCATGTAATTCAGCATCATCACTCTAATCATTTCATTCAGCCTAACTATTTGCAAGCTCCATTAGAGAATACAAGAATGGGTATCCGAAGAAGGCATCGCCACGTATTTCACCATCGGCATCACCATGTGCAAGAGATCAGAGGGCATTCCAACTTTCACTCCCATGTTACTGTTCCATCGTATAGAGCTCCAACAACAACTCATCATTCAAGAACTTCTTCAATACCGATACAAAATGCACCTCGCAGAGCCAACATGCATAGTTTGCATCCTCCCGCATTTCGTGAACTTCCATCATATTTGGTCATGGACGCCGATGACATGTCATACGAGACATTTTCTAATATGCAGGAATCTTTTTCATTAGATGACCCTCAAAGTGATATGCGCTTGGACATCGATGGCATATCATATGAGGAGCTTCTTGAGTTAGGTGAAAGGCTTGGCAATGGCAATGGAAATTTAGAAAGGGGTTTGTCGGAAGACGTTATTACAAGACAAATGCCGACAAAATCTTTTCTACTACCTGAGAACTTAGAGGGGTCAACTTCTGAGGATCGAGAAACTGATCTTTGCATAATATGCCAGGATGACTATAAGAACAAGGAGGAGATCGGTATTCTTCAATGCGGACATGAATACCACGCAGATTGTATAAAGAGATGGTTAATTCAGAAAAATATTTGTCCCATGTGCAAATCAAAAGCATTGACTATCGAATAG 807 0.4102 MAVRGLTIDSHFIVDSDENGMVYGMTQHHVIQHHHSNHFIQPNYLQAPLENTRMGIRRRHRHVFHHRHHHVQEIRGHSNFHSHVTVPSYRAPTTTHHSRTSSIPIQNAPRRANMHSLHPPAFRELPSYLVMDADDMSYETFSNMQESFSLDDPQSDMRLDIDGISYEELLELGERLGNGNGNLERGLSEDVITRQMPTKSFLLPENLEGSTSEDRETDLCIICQDDYKNKEEIGILQCGHEYHADCIKRWLIQKNICPMCKSKALTIE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00680 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 265 IPR013083 -
Viun11g00680 268 SMART ring_2 220 260 IPR001841 -
Viun11g00680 268 SUPERFAMILY RING/U-box 219 264 - -
Viun11g00680 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 27 265 IPR045191 GO:0061630
Viun11g00680 268 CDD RING-H2_RNF24-like 218 264 - -
Viun11g00680 268 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Viun11g00680 268 Pfam Ring finger domain 219 261 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00680 Viun-Chr11 8223735 8225004 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00680 128 265 C3H Transcription Factor Family AT2G15530 40.580 1.36e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00680 K19041 - vra:106752786 198.749