Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00668 ATGGAGGCTAGGACTGTGGAGAGGAAGAGATCACTGGTTGAGAGGGTGAGGAAGAATGTGGAAGAGGAAGTGGAGAATGAGGTGGAGGAGGAGGATGAAAGTGGAGCTAGTTTCACTGAAGAAGAGAAAAAGAGAGGGTTTGGTAGCAGCAATAGTGGTGGTGGCAGAAGAGGCTCAAGTGGTGGTGCTGCCGCTGGTGGTGGTGGTGGTGTTTCTCCACCTTCATGTCAGGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAAAGGTACCATCGCCGCCACAAGGTCTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTGGTTGCAGGGCTGAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCAACCCTGAAGCTGCCGGTGAGGGGAGCAAAGGGCATCACCACCCTAAGGAAACAACACAGTGCAGAATTCAGATGAACCTTCCAGGGAGTTCTTCTGGCTACAAGTCTTTCAACATCAGATGA 573 0.5253 MEARTVERKRSLVERVRKNVEEEVENEVEEEDESGASFTEEEKKRGFGSSNSGGGRRGSSGGAAAGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAAGEGSKGHHHPKETTQCRIQMNLPGSSSGYKSFNIR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00668 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 157 IPR044817 GO:0003677
Viun11g00668 190 Pfam SBP domain 76 149 IPR004333 GO:0003677
Viun11g00668 190 MobiDBLite consensus disorder prediction 140 190 - -
Viun11g00668 190 MobiDBLite consensus disorder prediction 1 78 - -
Viun11g00668 190 MobiDBLite consensus disorder prediction 170 190 - -
Viun11g00668 190 Gene3D - 67 137 IPR036893 GO:0003677|GO:0005634
Viun11g00668 190 Coils Coil 3 33 - -
Viun11g00668 190 PIRSF SBP 6 162 IPR017238 GO:0003677|GO:0003700|GO:0009908
Viun11g00668 190 SUPERFAMILY SBT domain 74 154 IPR036893 GO:0003677|GO:0005634
Viun11g00668 190 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Viun11g00668 190 FunFam Squamosa promoter-binding-like protein 14 68 137 - -
Viun11g00668 190 MobiDBLite consensus disorder prediction 1 23 - -
Viun11g00668 190 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00668 Viun-Chr11 8036229 8037604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00668 57 159 SBP-box Gene Family AT1G53160 67.308 1.41e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun11g00668 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00668 - - vra:106755766 279.256