Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00638 ATGGTGAGGTTCAACTTGGTCATGATTTGCTTTTCTTCCATGTTATATGCTGTTAATGCACTGAATAATGACGGGGTGGCTCTTCTGTCACTCCAGAATCATTGGACATTTGTGCCTCCTTCCATAAACTTGAGTTGGAATGCTTCTGATTCCACTCCATGTTCTTGGTTAGGAGTCCAGTGTGACAATAACAATAGTGCAATCTATCTTAACCTCTCTGGAAACTCAATTTCAGGTCTTCTGGGACCTGAAATTGGACACTTGAGTCACTTGCAAACACTTGACTTGTCCTTAAACAACATCTCAGGGAACATACCCTCTGAGTTAGGAAACTGTAGTCTGCTTCAAAACCTTGACCTTTCTTATAACAGTATCACAGGAAACATACCTGATAGTTTGAAAAACCTGCAGAATTTAGTCTCTTTCAGTGTTCCATACAATAGTCTAACAGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCCTGAACCAAAACTCTTTCACTGGTTCCATTCCAATGAATGTTGGGAACGGTTCAGAAATTGTGATACTGTATCTGGATCGTAATCAGTTGTCAGGAACTATTCCACCTTCCATTGGAAACTGCAGCAAATTAGAGGAACTGTATTTGGACTATAACCAGTTGCATGGAGTTCTACCTGAAAGTGTTAACAATCTTCAAAGTGTTGTTAAGTTGAGTTTCAGTAATAATAGACTTGAGGGTACCGTTCCATTATTAGGATCTAGCACATGTAAAAGTTTACAATATTTGGATCTGTCAGTGAATAAATTTAGTGGAGGCATGCCTTCAACCTTTGGGAATTGCAGTGGATTAAGAGAAATTTATGCTTTCAACACAAGTTTCGGAGGCAGCATTCCATCATCCTTAGGCCAACTAACACAACTTTCTATTCTTCGCCTTGAAACCAATCAATTTTCTGGTCAAATACCTTCAGAAATTGGTGATTGTAGGTCATTGCAAATGTTGATGTTGAATAACAATGAACTTGAGGGAGAAATTCCAAGTGAATTAGGAAAGCTGAGTCAGTTGCAAGATCTTAGACTTCATTACAACCATTTGACAGGTGGAATTCCAGTGAGCATTTGGAAAATTTCTAGCCTTCAGCAAGTGCATGTGTATTACAATAACCTTTCTGGTGAGGTGCCTTCAGAATTGACAGAACTCAAACAACTGAAAAAACTTGGCTTGTTCCGAAACCAATTCTCTGGAGTCATTCCTCAAAGCTTAGGAATCAATAGCAGTTTAGAGGAGTTAGATTTCTCATATAATCACTTCACTGGTAACATTCCTCCTAATCTCTGCTTTGGACAGCAATTATCTAAGCTAATCCTGGCTTCAAATCAATTGCAAGGTGGTATTCCTCCTGACATAGGAACATGTACAACACTGACTAGATTAAGGCTTGATGGAAACAACTTAACTGGAGCTTTACCTGATTTTACAAGCAATAGTAGTCTCACCTACATGGACTTCAGTGGGAACAACATCAATGGAACAATTCCATCAAGTTTGGGAAACTGCATAAATCTTACCACTGTTAGTTTTTCTCACAACAATCTTTCTGGGATCATACCCTTTGGGCTAGGAAACCTTGTGAACCTTCAAAAGTTGAACCTTTCTCAAAACAAATTAGAAGGTCCTTTGCCACATGAGCTGTCAAACTGTAAGAAAATGCAGTACTTCGATGCTGGATTCAACTCTCTGAATGGTTCATTCCCATCTAGTTTGAGAACTTGGACAGGGTTGACAACATTGAATCTAAGGGACAATCATTTCACTGGTGGTATCCCAACTTTCTTATCAGAATTTGAAGGCCTTTCTGATCTGCATCTTGGGGGAAATGATTTTGGAGGCCAGATTCCTAGATCAATTGGTGAGATGCAAAATCTTCTTTATGAGTTGAATCTAAGTGCTAATGGGTTGACAGGTGAAATTCCTCCTGAGATTGGGAAACTGAAACTACTGCAAAGCTTGGATATTTCTCTCAACAATCTGACTGGAAAAATTGAAGTTCTTGAAGATCTCTCTTCACTGATTCAACTCAATGTTTCATACAATTCTTTTTCTGGTCCTCTTCCAGACACACTAGTGAACTTGCTCCATTCTTCTCCCTCATCATTCTTGGGAGTTCCTGGCTTATGTGTTAGATGTTTTTCCTCAAATTGTTCAAAAAATAACAGCTTGAAGCCATGTGACGAGAACAACACTACAAATAAAAAAGGGCTGAGTAAAGTTAAAGTTATGTTGATAGCAGTTGGATCTTCACTACTGATATCAATTCTGTTACTTGGTCTTGTTTACCTGCTATACTACAAGCAAGATGTGAAGATTTTTCCCGAACAGAGATCTTCAACTTTGTTCAAGAAGGTGATGAAGGTCACAGAGAACCTAAATGATAGGCATGTTATTGGGAGAGGAGCACATGGAGTTATTTACAAAGTTGAATTCAGTGTGGACGAAGTTTTTGTCATAAAGAAATTTCCCTTTGCAGAAAACAGAAAACTGATCACTAGCATGAGCACAGAGATTGAAACCACTGGGAAGATAAGGCACAAAAATCTAGTGAGAATAAAAAACTTCTGGTTAAGAAAGGACTTTGGTCTAATCTTGTACAAGTACATGGAAAATGGAAGTCTTCATGATGTTCTGCATGAGAAGTTTCCACCACCACCTTTGGAGTGGAATGTGCGCTATGAGATTGCAGTTGGAATTGCTCATGGACTTGCATACCTCCATCATGATTGTGACCCTTTCATAGTGCACAGAGATATCAAACCAAAGAATATACTTTTGAATTCTGATATGGTGCCTCATATTGCTGATTTTGGCATTGCAAGGCTTCTAGACCATTCCTCTTATTCATTGCAATCTTTCTCTGTTCCTGGTACAGTAGGCTACATTGCACCAGAGAATGCTTATTCACCAGTGATGAGTAAGAAGAGTGATGTGTATAGTTACGGAGTGCTTTTGCTAGAGCTGATATGCAGAAAGAAGGTGCTAGATGATCCTTCATTTATGGAAGGAACAGATCTTGTGGGGTGGGTTACATGTACCTGGGAGAAAACAAAAGGCATTGATGGAATTGTTGACTCAGGGCTTGAAGAGGAACTTTTGGATTCAAATTTGAGGGAACAAGTTGAAAAAGTGCTTTTGATGGCATTGAGATGTACTGATAAGCATCCAGGTGAGAGACCAACAATGAGAGAAGTGGTCAACGAGTTGATGGATACATGCAAAGATCCTGACACGAAGAAGAGTAGCCAAATGTTGACTAGGACATTCACTCTGTAA 3330 0.391 MVRFNLVMICFSSMLYAVNALNNDGVALLSLQNHWTFVPPSINLSWNASDSTPCSWLGVQCDNNNSAIYLNLSGNSISGLLGPEIGHLSHLQTLDLSLNNISGNIPSELGNCSLLQNLDLSYNSITGNIPDSLKNLQNLVSFSVPYNSLTGQIPEFLFQLQHLEDLLLNQNSFTGSIPMNVGNGSEIVILYLDRNQLSGTIPPSIGNCSKLEELYLDYNQLHGVLPESVNNLQSVVKLSFSNNRLEGTVPLLGSSTCKSLQYLDLSVNKFSGGMPSTFGNCSGLREIYAFNTSFGGSIPSSLGQLTQLSILRLETNQFSGQIPSEIGDCRSLQMLMLNNNELEGEIPSELGKLSQLQDLRLHYNHLTGGIPVSIWKISSLQQVHVYYNNLSGEVPSELTELKQLKKLGLFRNQFSGVIPQSLGINSSLEELDFSYNHFTGNIPPNLCFGQQLSKLILASNQLQGGIPPDIGTCTTLTRLRLDGNNLTGALPDFTSNSSLTYMDFSGNNINGTIPSSLGNCINLTTVSFSHNNLSGIIPFGLGNLVNLQKLNLSQNKLEGPLPHELSNCKKMQYFDAGFNSLNGSFPSSLRTWTGLTTLNLRDNHFTGGIPTFLSEFEGLSDLHLGGNDFGGQIPRSIGEMQNLLYELNLSANGLTGEIPPEIGKLKLLQSLDISLNNLTGKIEVLEDLSSLIQLNVSYNSFSGPLPDTLVNLLHSSPSSFLGVPGLCVRCFSSNCSKNNSLKPCDENNTTNKKGLSKVKVMLIAVGSSLLISILLLGLVYLLYYKQDVKIFPEQRSSTLFKKVMKVTENLNDRHVIGRGAHGVIYKVEFSVDEVFVIKKFPFAENRKLITSMSTEIETTGKIRHKNLVRIKNFWLRKDFGLILYKYMENGSLHDVLHEKFPPPPLEWNVRYEIAVGIAHGLAYLHHDCDPFIVHRDIKPKNILLNSDMVPHIADFGIARLLDHSSYSLQSFSVPGTVGYIAPENAYSPVMSKKSDVYSYGVLLLELICRKKVLDDPSFMEGTDLVGWVTCTWEKTKGIDGIVDSGLEEELLDSNLREQVEKVLLMALRCTDKHPGERPTMREVVNELMDTCKDPDTKKSSQMLTRTFTL 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00638 1109 Gene3D Ribonuclease Inhibitor 424 739 IPR032675 -
Viun11g00638 1109 Gene3D Ribonuclease Inhibitor 183 423 IPR032675 -
Viun11g00638 1109 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Viun11g00638 1109 Gene3D Ribonuclease Inhibitor 21 181 IPR032675 -
Viun11g00638 1109 SUPERFAMILY L domain-like 23 287 - -
Viun11g00638 1109 ProSiteProfiles Leucine-rich repeat profile. 90 112 IPR001611 GO:0005515
Viun11g00638 1109 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Viun11g00638 1109 SMART serkin_6 810 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00638 1109 SUPERFAMILY L domain-like 466 715 - -
Viun11g00638 1109 Gene3D Phosphorylase Kinase; domain 1 782 886 - -
Viun11g00638 1109 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 575 1082 - -
Viun11g00638 1109 SMART LRR_typ_2 353 377 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 305 329 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 544 568 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 640 665 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 88 112 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 208 231 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 688 711 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 160 184 IPR003591 -
Viun11g00638 1109 SMART LRR_typ_2 426 449 IPR003591 -
Viun11g00638 1109 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 346 - -
Viun11g00638 1109 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515
Viun11g00638 1109 Pfam Protein kinase domain 813 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00638 1109 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 57 253 - -
Viun11g00638 1109 FunFam Serine/threonine-protein kinase-like protein CCR4 887 1106 - -
Viun11g00638 1109 Coils Coil 668 688 - -
Viun11g00638 1109 Pfam Leucine Rich repeat 87 103 IPR001611 GO:0005515
Viun11g00638 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Viun11g00638 1109 PRINTS Leucine-rich repeat signature 544 557 - -
Viun11g00638 1109 PRINTS Leucine-rich repeat signature 115 128 - -
Viun11g00638 1109 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 348 446 - -
Viun11g00638 1109 Gene3D Transferase(Phosphotransferase) domain 1 887 1106 - -
Viun11g00638 1109 SUPERFAMILY L domain-like 255 509 - -
Viun11g00638 1109 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Viun11g00638 1109 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 450 736 - -
Viun11g00638 1109 ProSiteProfiles Protein kinase domain profile. 810 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00638 1109 SUPERFAMILY Protein kinase-like (PK-like) 794 1087 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00638 Viun-Chr11 7325401 7329473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00638 12 1090 Receptor kinase-like Gene Family AT1G73080 50.411 0.0 1010
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun11g00638 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00638 - - qsu:112010432 1278.46