Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00615 ATGCGGTTATTCCATGTTCTTGTCTTAGGGTTTGTGGCTTTGAATTGCGTTCAAGTTTTTGAATCCAATGCTCAACTCATACCACAAGATGAAGTGAGAGTACTGCAAGCAATATCGGATAAACTAGAAAACTTGAACTGGACAGTTACAGAGCGTTCCTGCACAGAGAATGAAGGGTTTAATGGCAAGATGAATATAGGAGATGACATAGTGAGGAATGTCACATGCAATTGCAACTTCGAAAATAGCACTGTTTGCCATGTTGATAACATCTTTCTCAAGGGTCAAAATCTATCGGGAGTTTTTCCCAGTGAATTTGGAAATCTCACCCATCTGAAAGTGCTTGATCTTTCCCGCAACTATCTCAACGGCTCGCTTCCAAAAAGTTTTCCTCCCAACTCTTCACTGATCAATTTGTCCCTTCTAGGAAACCGACTAAGTGGTCAAATTCCCACAGAAATTGGTGATATTGATGGTCTGGAGGAACTGGTCTTAGAATGTAACCAACTTGAAGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAATTTGAAGAGACTGCTTCTTTCTTCAAATAATTTTACAGGGACAATACCAGAAACATTTAGCGAACTTAAAAATCTGACTGATTTTAGGATAGATGGAAGCAGTTTATCCGGACCAATACCCAGTTTCATTGGGAACTGGACCAAACTTGACAGACTGGATTTGCAGGGAACAAATATGGAAGGCCCAATTCCTTCCACTATATCTCAGTTGAAACTTTTGACTGAATTGAGAATAACTGATTTGAAAGGACCAACTATGGATTTTCCTAATCTGGAGGAGTTGAAAAACTTGGAACGACTGGCATTAAGAAATTGCTTAATCACGGGTCGTATTCCAGAGTACTTCAGTGAAATGGCAAGTTTAACTACTTTGGACCTAAGCTTCAACATGTTAACTGGTCCAGTCCCAGAATCAATACAAAATATGAAAAGCCTAGATTACTTGTTTCTGACAAATAATTCTATGAGTGGAGAAATTCAGGACTGGATATTGAGCTTCAAAGAAAACATAGATTTATCTTACAACAATTTTACCAAGTCTTCTGCATCTAGCTGTCAGCAGGTGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCGGAAACTACGGCTTCAACTTTTTGTTTGAAGAGGAATCTTCCTTGTGCAGGAGAACCCCAGTATAAGTCATTGTTCATAAACTGTGGAGGAAGTGAGGGGGAGTTTGAAGGCAATAACTATGTAGGTGACCTCCGCCTAGATGGCATTTCAACCTTTGATCTTAGAAATGATGGACAATGGGCCTATAGCAGCACAGGAGTATTTATGGGAAAAGTTGATGCAGATTATGTAGCACGAAATACATTTTCTTTGAATATTAGTGGTCCAGACTATTACCAAAACGCTCGCCTTTCTCCTCTGTCGCTTAACTACTATGGCCTTTGTTTGCCAAACGGAAACTATAAAGTGAAGCTCCATTTTGCTGAGATAATGTATACTGATGATCAAACTTTTAGAAGTTTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTGTTAGATATTTGAAAGACTTTAACATTGTGGAAGAGGCTGGTGGAGTTGGAAAGGGCATCACTAGGGAGTATGATGTTGATGTTGATGATGGTACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTTCAATTCCTGATAGAGGTGTATATGGACCTCTGATATCTGCTATTGAGATGATACCAAACTTTGAGAATCCTTCAAAAGGGCTGTCTGGTGGAGTCATTGTTGGAATTGTTGCTGCATCATGTGGGCTTGTCATATTGATACTGGTTGTCCTTTGGAAGATGGGTCTTCTTTGTAGGAAAGATACAACGGATAAAGAACTTCTAGATATGAAAACGGGCTATTACAGCTTAAGACAAATTAAAGCAGCTACTAATAACTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTATACAAGGGTGTGCTTCCAGATGGTGATGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAGGGTAACAGAGAATTTGTCAATGAAATTGGCATGATATCTGCTTTGCAACATCCTAATCTGGTGAAGCTGTATGGCTGTTGCATTGAAGGAAACCAGTTGCTTTTGATATACGAATACATGGAGAACAACAGTCTTGCTCGTGCACTTTTCGGTGGAGAAGAAGAGAAGCTGAACTTAGACTGGCCTACAAGAATGAAGATCTGTGTGGGGATAGCAAGGGGATTGGCTTATCTTCACGAGGAATCAAGGTTGAAAATAGTGCACAGGGACATTAAGGCAACCAATGTCTTACTTGATAGGGATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAAAATACTCATATCAGTACACGCATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGAGGGGTTACTTAACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGCAACACAAAATACAGACCAAAGGAAGAGTTTGTATACCTTCTAGATTGGGCTTATGTTCTCCAAGAGCAGGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTTAAACTACTCTCAAGAGGAAGCCATGAGAATGCTGAGCTTGGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCAACCATGTCTTCTGTTGTGAAAATGCTTGAAGGAAAAATTCCAATCCAAGCTCCTATAATCAAGCGCAGTGAGAGCAACCAAGATTTAAGATTTAAAGCTTTTGAGTTGCTATCACAAGACAGCCAAACTCATGTTTCATCTGCATACTCTCAAGAAAGTATGAAGCAAGGAAACAAATCAGAAGATGGACCATGGCTTGACTCCTCCCTATATCTTCAAAGTGATGGCCATTCTTCAAGCAATAAACTAATCTAA 3021 0.4015 MRLFHVLVLGFVALNCVQVFESNAQLIPQDEVRVLQAISDKLENLNWTVTERSCTENEGFNGKMNIGDDIVRNVTCNCNFENSTVCHVDNIFLKGQNLSGVFPSEFGNLTHLKVLDLSRNYLNGSLPKSFPPNSSLINLSLLGNRLSGQIPTEIGDIDGLEELVLECNQLEGPLPPSLGNLSNLKRLLLSSNNFTGTIPETFSELKNLTDFRIDGSSLSGPIPSFIGNWTKLDRLDLQGTNMEGPIPSTISQLKLLTELRITDLKGPTMDFPNLEELKNLERLALRNCLITGRIPEYFSEMASLTTLDLSFNMLTGPVPESIQNMKSLDYLFLTNNSMSGEIQDWILSFKENIDLSYNNFTKSSASSCQQVDVNLASSHSSSAETTASTFCLKRNLPCAGEPQYKSLFINCGGSEGEFEGNNYVGDLRLDGISTFDLRNDGQWAYSSTGVFMGKVDADYVARNTFSLNISGPDYYQNARLSPLSLNYYGLCLPNGNYKVKLHFAEIMYTDDQTFRSLGRRIFDVSVQGVRYLKDFNIVEEAGGVGKGITREYDVDVDDGTLEIHLYWAGKGTTSIPDRGVYGPLISAIEMIPNFENPSKGLSGGVIVGIVAASCGLVILILVVLWKMGLLCRKDTTDKELLDMKTGYYSLRQIKAATNNFDPANKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGGEEEKLNLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDRDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGLNYSQEEAMRMLSLALLCTNPSPTLRPTMSSVVKMLEGKIPIQAPIIKRSESNQDLRFKAFELLSQDSQTHVSSAYSQESMKQGNKSEDGPWLDSSLYLQSDGHSSSNKLI 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00615 1006 SMART serkin_6 660 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00615 1006 SUPERFAMILY Protein kinase-like (PK-like) 643 932 IPR011009 -
Viun11g00615 1006 Gene3D Ribonuclease Inhibitor 266 391 IPR032675 -
Viun11g00615 1006 Pfam Protein tyrosine and serine/threonine kinase 664 931 IPR001245 GO:0004672|GO:0006468
Viun11g00615 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 963 - -
Viun11g00615 1006 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515
Viun11g00615 1006 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Viun11g00615 1006 Pfam Leucine rich repeat 159 216 IPR001611 GO:0005515
Viun11g00615 1006 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 31 197 - -
Viun11g00615 1006 CDD STKc_IRAK 666 933 - -
Viun11g00615 1006 Gene3D Transferase(Phosphotransferase) domain 1 736 950 - -
Viun11g00615 1006 Gene3D - 406 593 - -
Viun11g00615 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 735 - -
Viun11g00615 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Viun11g00615 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Viun11g00615 1006 SMART LRR_typ_2 181 204 IPR003591 -
Viun11g00615 1006 SMART LRR_typ_2 301 324 IPR003591 -
Viun11g00615 1006 SMART LRR_typ_2 109 132 IPR003591 -
Viun11g00615 1006 Pfam Malectin domain 406 588 IPR021720 -
Viun11g00615 1006 Gene3D Ribonuclease Inhibitor 35 159 IPR032675 -
Viun11g00615 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 593 - -
Viun11g00615 1006 ProSiteProfiles Protein kinase domain profile. 660 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00615 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Viun11g00615 1006 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 266 389 - -
Viun11g00615 1006 SUPERFAMILY L domain-like 85 345 - -
Viun11g00615 1006 Gene3D Ribonuclease Inhibitor 162 265 IPR032675 -
Viun11g00615 1006 MobiDBLite consensus disorder prediction 969 1006 - -
Viun11g00615 1006 Gene3D Phosphorylase Kinase; domain 1 627 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00615 Viun-Chr11 6811132 6823495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00615 16 992 Receptor kinase-like Gene Family AT1G53440 60.729 0.0 1195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00615 PK_Tyr_Ser-Thr 9.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00615 - - gmx:100817368 1689.86