Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00600 ATGCCTGGGAACAAGTACCACGGAAACCAAATACCGGGGCGTGTGGAACGGCTTCTGAGAGAGAGAGAGCTGCGGAAGAGTGGGAGAGTGATTCAGTTGAAGGAGGGGAATGAGGTCAATGGGAGCAGTGGTGAGGCTTTCGAGAAGGAGAAGGCGCGTTTGAGGGAAGTAGTGAGCGAGGCGGGTGATGGTGTTGAAGGGAGTAGGGTGAGGAAGGGGGTGGGGGAAGAGAGGCATGAAACGAAGCCGTTTAGACAGAGGCTGTTGGTGGTTGCTAATAGGTTGCCGGTGTCGGCAGTAAGGAAAGGCGAGGACGCGTGGTCGTTGGAGATAAGTGCCGGTGGTCTCGTCAGCGCGTTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCGTTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATATATTGTGGCCCCTTTTCCACTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACACGCAGTTTTCAGTCTCAGTTTGAGGCATATGAGAAAGCAAATCAGATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTAAAGAAACATAACAAAAAAATGAAAGTTGGATGGTTTCTCCACACCCCTTTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCCGTTCTCGCTGCTGATTTAGTTGGTTTTCACACCTATGATTATGCAAGACATTTTGTTAGTGCCTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCGGAACGATTTATTCGAGCTCTTGACCTTCCAGCAGTACAAGATCACATCAAAGAACTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTTTAGCGTTTGAAAAATTTTTGGAAGAAGATCCTTATTGGCGTGATAAAGTTGTTCTGCTACAAATCGCTGTCCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGGCGCATCAATGGCAGATTTGGAACGTTAACTACAGTTCCTATACATCACTTGGATCGCTCACTTGACTTTTATCAACTATGCGCTTTGTACGCTGTTACTGATGTAGCACTAGTCACTTCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCAGCACAGTCTCTTGGGGCTGGGGCAATTCTTGTCAACCCGTGGAACATTACAGAAGTTGCAGCTGCAATTGGCAGGGCTCTGAAGATGCCATCTGCAGAAAGAGAAAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACCTTCGTAAGTGAACTAAATGACACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCAACTTCCAACCAAGACTGCAATTGAAAGTTATCAGCAATCAACTAATCGATTGCTCATCTTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAAAACTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGACAAGTCCTGGATGATAATTTCAAAGAATATGACATGTGGTTGGCGGCTGAGAATGGAATGTTTTTACATCCTTCGAAGGGTGAGTGGATGACGACAATGCCAGAGCATCTGAATATGGAATGGCTTGATAGTGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCACATTTTGATTTTGAAGAAAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAGCTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTGACGAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCAATGACATCACCAATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGATGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCCTCTATTGGTGTGGGTCTTCCACGAAGCAAGGTAACATCAGATGGAGTTAAATTTCCTGTTGAGAGGAAACCATGTTTGAAGGAGCCACCAATTAAGAGCGGACCAAAGTCATCTCAAAATAAGGCAACACGACCAGTGTCAAATTCTGAGAAGAAATCAAACAATCATATCTCCATTACACCACGAAGGGCAGCACCTGAAAAGGTTTCATGGAATGTCCTCGACCTCAAGAAAGAGAATTACTTCTCTTGTGCCATTGGACGAACTCGAACAAATGCTCGATATACGCTTGATTCATCCGATGATGTTGTTTCATTTCTGAAGGAACTAGCTACTAATGCCTCTATCCGAAAGTAG 2775 0.4404 MPGNKYHGNQIPGRVERLLRERELRKSGRVIQLKEGNEVNGSSGEAFEKEKARLREVVSEAGDGVEGSRVRKGVGEERHETKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPAVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEEDPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFYQLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIGRALKMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPQLPTKTAIESYQQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTVVVLSGSGRQVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWLDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTSDGVKFPVERKPCLKEPPIKSGPKSSQNKATRPVSNSEKKSNNHISITPRRAAPEKVSWNVLDLKKENYFSCAIGRTRTNARYTLDSSDDVVSFLKELATNASIRK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00600 924 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 79 917 IPR001830 GO:0003824|GO:0005992
Viun11g00600 924 CDD GT20_TPS 87 552 IPR001830 GO:0003824|GO:0005992
Viun11g00600 924 SUPERFAMILY HAD-like 584 917 IPR036412 -
Viun11g00600 924 Gene3D - 588 811 IPR023214 -
Viun11g00600 924 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 87 552 IPR012766 GO:0003825|GO:0005992
Viun11g00600 924 MobiDBLite consensus disorder prediction 839 866 - -
Viun11g00600 924 FunFam Alpha,alpha-trehalose-phosphate synthase 608 678 - -
Viun11g00600 924 Pfam Glycosyltransferase family 20 87 552 IPR001830 GO:0003824|GO:0005992
Viun11g00600 924 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 79 333 - -
Viun11g00600 924 Gene3D - 674 756 - -
Viun11g00600 924 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 674 756 - -
Viun11g00600 924 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 334 536 - -
Viun11g00600 924 Gene3D Glycogen Phosphorylase B; 78 333 - -
Viun11g00600 924 MobiDBLite consensus disorder prediction 830 867 - -
Viun11g00600 924 Gene3D Glycogen Phosphorylase B; 334 537 - -
Viun11g00600 924 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 86 554 - -
Viun11g00600 924 CDD HAD_TPP 585 818 - -
Viun11g00600 924 Pfam Trehalose-phosphatase 606 807 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00600 Viun-Chr11 6516054 6533734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00600 1 921 Trehalose Biosynthesis Gene Families AT1G78580 75.793 0.0 1444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00600 K16055 - gmx:100797320 1674.06