Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00598 ATGTCTCAATCTCACAACCCTAAAATGCATTCCTCCGCCACCTCCCTCCACCACCTTCCGCCGCTCAAAAGACTCCGACTCATTCAACAACAACAACAACAAAATCACTTTTCTGACTCTTCACCTTTACCCGCCAAAAAACGCAGAGAATCTCGAACCCCTTCTCCCCCTTCTCCTCCTTCCACCATACATAACTTCTCCCTCCCCGCCAAAAAACGAGTGTGGGCCCCATACCCCCAAACTCCCCCATCCTCAGACGACACCGTTTTCCCTCCCCAACCCTCGGACGACGCCGTTCCTCCCTTCGATCTCAACATCGAGTACAACCCCAACCTCGGAGAATCCCAAAACAATGCCGATGCCGACGCCGACGACGACGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGGGACCCTGCGGACCCGATCGTGTTCTGCGACGGGTGCGATCTCACGGTGCACGCCTCCTGCTACGGCCACCCTTTGTCGAAGGGAGTCCCCGATGGCGACTGGTTCTGCGAACGGTGTCGTGTCGGGGAGGGCAAGAGCGGCATGCGCTGTGCGCTGTGTCCGGCGCGTGAGGGCGCGATGAAGCGCACCGCGGACGGCGCGTGGGCGCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTCCAGGACCCCGAGGGGAGAGAGGGGATCGACTGCTCCATGGTTCCGAGGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGAGTGTTGTGACGGTTGCGGTCTGGTGTGCTCTGAGCCAAAGTGTGGGTTGGCGTTTCATGTGACGTGCGCGCTGAAGGAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGTGCCACCATTGTTGCTGGCTTCTGCAAAAGACACACCCAGATATGGGAGAAGCAATCTGGGAAGTACAAAATTGTCGCTCTTGAAGATGAAAAGTAG 951 0.5762 MSQSHNPKMHSSATSLHHLPPLKRLRLIQQQQQQNHFSDSSPLPAKKRRESRTPSPPSPPSTIHNFSLPAKKRVWAPYPQTPPSSDDTVFPPQPSDDAVPPFDLNIEYNPNLGESQNNADADADDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSKGVPDGDWFCERCRVGEGKSGMRCALCPAREGAMKRTADGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPRKRWSQRCYLCECCDGCGLVCSEPKCGLAFHVTCALKEELWIEYKEGKKGATIVAGFCKRHTQIWEKQSGKYKIVALEDEK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00598 316 SMART PHD_3 242 297 IPR001965 -
Viun11g00598 316 SMART PHD_3 129 178 IPR001965 -
Viun11g00598 316 ProSitePatterns Zinc finger PHD-type signature. 130 177 IPR019786 -
Viun11g00598 316 CDD PHD_BRPF_JADE_like 129 177 - -
Viun11g00598 316 PANTHER PHD FINGER PROTEINS 116 297 - -
Viun11g00598 316 ProSiteProfiles Extended PHD (ePHD) domain profile. 185 297 IPR034732 -
Viun11g00598 316 SUPERFAMILY FYVE/PHD zinc finger 120 194 IPR011011 -
Viun11g00598 316 ProSiteProfiles Zinc finger PHD-type profile. 127 180 IPR019787 -
Viun11g00598 316 Pfam PHD-zinc-finger like domain 187 296 - -
Viun11g00598 316 MobiDBLite consensus disorder prediction 1 102 - -
Viun11g00598 316 MobiDBLite consensus disorder prediction 26 41 - -
Viun11g00598 316 Pfam PHD-finger 130 178 IPR019787 -
Viun11g00598 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 299 IPR013083 -
Viun11g00598 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 184 IPR013083 -
Viun11g00598 316 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00598 Viun-Chr11 6504007 6505501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00598 23 316 C2H2 Transcription Factor Family AT3G14740 47.305 4.91e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun11g00598 zf-HC5HC2H_2 9.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00598 K11380 - gmx:100802652 410.609