Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00587 ATGGTGGATGATCAGGGATTACTAAAAGATGGGAAACTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAACTCAAGGGGTGAGAGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATCACCGAATACTAGTCTACAATTATCTTGAGAAAAATAGCCTTTCGCAAACCCTTTTAGGTTTAGGTCACAGTAGTAACATCTTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTGCATGAAGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACGAAAACCTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACGCGTGTGGCCGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGAGGGCACCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTACTTCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACGCTTACCGATAGGAGAGCAGTTTCTTTTAGAAACGACATGGGAGCTTTATCAGCGAAGGGAATTGGTAGCGCTTGTAGATGCATCCCTAGACGGGCATTTCGACGCCGAGGAGGCTTGTACATTTCTGAAAGTTGGACTTTTCTGCACTCAGGACACGTCGAAACTCCGGCCACCGATGTCTTCTGTTGTCAAGATGCTCGCCGGAGAAATGGATATTGATGAAAGCAAGATAACAAAGCCAGGCCTGATTTCAGATTTTATGGACCTTAAAATCAGAGGAGATAAAAAAGATGGTGATATTGAAACCAAGGGTTCATCTTCCTACAATGCATCTTCTGCTTCAGATAGCCAGGGTAACACCATGTCTTTTGCTGCAAGTACAAGTACAACTGCAACCTTCACTCTTAAATATGATCAAAGCTTGTAA 1011 0.4115 MVDDQGLLKDGKLAAIKVLSAESTQGVREFMTEINVISEIEHENLVKLYGCCVEGNHRILVYNYLEKNSLSQTLLGLGHSSNIFFDWKTRSRICIGIARGLSYLHEEVRPHIVHRDIKASNILLDENLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFLLETTWELYQRRELVALVDASLDGHFDAEEACTFLKVGLFCTQDTSKLRPPMSSVVKMLAGEMDIDESKITKPGLISDFMDLKIRGDKKDGDIETKGSSSYNASSASDSQGNTMSFAASTSTTATFTLKYDQSL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00587 336 Pfam Protein tyrosine and serine/threonine kinase 14 190 IPR001245 GO:0004672|GO:0006468
Viun11g00587 336 MobiDBLite consensus disorder prediction 298 315 - -
Viun11g00587 336 FunFam cold-responsive protein kinase 1 65 277 - -
Viun11g00587 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Viun11g00587 336 Gene3D Phosphorylase Kinase; domain 1 5 65 - -
Viun11g00587 336 MobiDBLite consensus disorder prediction 293 315 - -
Viun11g00587 336 SUPERFAMILY Protein kinase-like (PK-like) 7 261 IPR011009 -
Viun11g00587 336 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 5 301 - -
Viun11g00587 336 SMART serkin_6 5 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00587 336 Gene3D Transferase(Phosphotransferase) domain 1 66 276 - -
Viun11g00587 336 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00587 Viun-Chr11 6400725 6404393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00587 5 280 Receptor kinase-like Gene Family AT1G56120 52.536 1.29e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00587 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00587 - - gmx:100800503 559.296