Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00586 ATGACTTGCTTCCCATTCTCATTTGGTAGGAAAGTGCCCTCTGTGGCAAGACACGATCCAGATATTGATGAAGAACTCTCAGGCATTCAAAATGTAAAAATGTTTACCTACAAAGAACTAAGAGTTGCATCTGACAATTTCAGCCAGGCCAATAAAATTGGGCAGGGTGGCTTTGGTTCTGTTTATAAGGGATTACTAAAAGATGGGAAACTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAACTCAAGGGGTGAGAGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAATCACCGAATACTAGTCTACAATTATCTTGAGAAAAATAGCCTTTCGCAAACCCTTTTAGGTTTAGGTCACAGTAGTAACATCTTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTGCATGAAGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACGAAAACCTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACGCGTGTGGCCGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGAGGGCACCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTACTTCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACGCTTACCGATAGGAGAGCAGTTTCTTTTAGAAACGACATGGGAGCTTTATCAGCGAAGGGAATTGGTAGCGCTTGTAGATGCATCCCTAGACGGGCATTTCGACGCCGAGGAGGCTTGTACATTTCTGAAAGTTGGACTTTTCTGCACTCAGGACACGTCGAAACTCCGGCCACCGATGTCTTCTGTTGTCAAGATGCTCGCCGGAGAAATGGATATTGATGAAAGCAAGATAACAAAGCCAGGCCTGATTTCAGATTTTATGGACCTTAAAATCAGAGGAGATAAAAAAGATGGTGATATTGAAACCAAGGGTTCATCTTCCTACAATGCATCTTCTGCTTCAGATAGCCAGGGTAACACCATGTCTTTTGCTGCAAGTACAAGTACAACTGCAACCTTCACTCTTAAATATGATCAAAGCTTGTAA 1185 0.4101 MTCFPFSFGRKVPSVARHDPDIDEELSGIQNVKMFTYKELRVASDNFSQANKIGQGGFGSVYKGLLKDGKLAAIKVLSAESTQGVREFMTEINVISEIEHENLVKLYGCCVEGNHRILVYNYLEKNSLSQTLLGLGHSSNIFFDWKTRSRICIGIARGLSYLHEEVRPHIVHRDIKASNILLDENLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFLLETTWELYQRRELVALVDASLDGHFDAEEACTFLKVGLFCTQDTSKLRPPMSSVVKMLAGEMDIDESKITKPGLISDFMDLKIRGDKKDGDIETKGSSSYNASSASDSQGNTMSFAASTSTTATFTLKYDQSL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00586 394 MobiDBLite consensus disorder prediction 356 373 - -
Viun11g00586 394 CDD STKc_IRAK 53 319 - -
Viun11g00586 394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 359 - -
Viun11g00586 394 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Viun11g00586 394 FunFam cold-responsive protein kinase 1 123 335 - -
Viun11g00586 394 SMART serkin_6 47 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00586 394 FunFam cold-responsive protein kinase 1 18 122 - -
Viun11g00586 394 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Viun11g00586 394 SUPERFAMILY Protein kinase-like (PK-like) 27 319 IPR011009 -
Viun11g00586 394 ProSiteProfiles Protein kinase domain profile. 47 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00586 394 Pfam Protein kinase domain 48 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00586 394 MobiDBLite consensus disorder prediction 351 373 - -
Viun11g00586 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Viun11g00586 394 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00586 Viun-Chr11 6400725 6405420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00586 17 327 Receptor kinase-like Gene Family AT1G07650 55.449 3.86e-112 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00586 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00586 - - gmx:100800503 665.996