Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00584 ATGGTGGAGATAAGTTTTTCTGCAAAAATACCCATGCAGTCCATTGCTGTTGCTCTCAAAGGGGTTGACTCAGATGCCAATTCTGAAGATGCGTTGAGGGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTGACCGTGGGTGTCTTTTGGTAAGGCAGTCCTTTTTTCATGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTTGGGTTTTCATTCGAGTTTTCGTTCCACACAGCGAGGATTGACTCTAAATATGGACGTGTCAACAACTATGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAGGGAACCCCGTTATATTGACTGGGAAAAGGCCAAAAAGGTGCTTAAAAATTTGAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAACAACTTTTTAGTATGAAGGTTAAAAATGACAAAGGCAATAATGAAGGACAGACTGTGGAGATTACTGTATATGAATATTTTGTCAAACATTGTGGCATTGATCTGCCTTCATCTATATATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGCACTCTCTCCAGTGCAAAGAGCATCTTTAGTTGAGAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATTCTGTAGGAAAATATTGCTACGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTTCTTGAGGCACCAAAGTTGAAGGTTGGCCAGAATGATGTTTGCATCCCATGTAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCATATTCTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTGAAATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGCGTCTTACCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATCGGTGTTGTTACACAGTGCATTTCCCCTGTCAAGATCACTGATCAATACCTTAATAACATACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATGGAGCATTCTGGCCATCTTCCCTTAATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGAGGTCAATTAGATATTCCATCAGTTGCAGCTGTTGTTGGATCTCGATGTTGGCCACTGATTTCAAGGTATAGAGCGTCTGTGAGAATGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCACTAGAAAATGGGGGTGACGATGGTATTATCAGGGAATTGCTGCTAGATTTCTATGATTCAAGTAACAGCCGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTCAGTGAATCACAATTTCAACAAGTTTTGACTGTGGAGCTTAACCAGATAATAAAGGCCTATCAACGTCTGGGTGAGGATGATGTTCCCAAATTCACCGTGATAGTGGCGCAGAAAAATCATCATACTAGGCTGTTTCAGTCTAATAGTCCGGAAAATGTTCCTCCAGGGACTGTTGTGGACACAACAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTGCTTGATGAGATTGGTTTCTCGGCAGATGAGTTACAAAATTTGATCCATTCGCTGTCCTATGTGAACCAAAGAAGCACGACTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCTGCGGCTCAGATTGGACGATTTTTGGATGTTAATGATTTATCAGAAACTGGGTTAAGTTCTACTCCAGAGTTTCCAAGATTGCATAAGAATATCAGGAGTTCTATGTTCTTCTGTTGA 2172 0.4079 MVEISFSAKIPMQSIAVALKGVDSDANSEDALRVLDTVLRQRAADRGCLLVRQSFFHDDPRNFTDVGAGVTAVLGFHSSFRSTQRGLTLNMDVSTTMIIKPGPVIDFLLSNQQVREPRYIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQLFSMKVKNDKGNNEGQTVEITVYEYFVKHCGIDLPSSIYFPCLDVGKPNRPNYLPLELCSLVSLQRYTKALSPVQRASLVEKSRQKPQDRIKILKNSVGKYCYDDDPVLAACGISVDKQLALVEGRVLEAPKLKVGQNDVCIPCNGRWNFNKKTLLQPSHIDYWAVVNFSARCDTSYISRELIRCGMSKGINIERPYSLIEEEPQLRKSNPVARVERMFDLLKSKLNREPKLILCVLPERKNCDIYGPWKKKCLSEIGVVTQCISPVKITDQYLNNILLKINSKLGGINSLLAMEHSGHLPLIKDTPTMILGMDVSHRGQLDIPSVAAVVGSRCWPLISRYRASVRMQASKVEMIDALYKPLENGGDDGIIRELLLDFYDSSNSRKPTQFIVFRDGVSESQFQQVLTVELNQIIKAYQRLGEDDVPKFTVIVAQKNHHTRLFQSNSPENVPPGTVVDTTITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADELQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQIGRFLDVNDLSETGLSSTPEFPRLHKNIRSSMFFC 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00584 723 ProSiteProfiles PAZ domain profile. 126 219 IPR003100 GO:0005515
Viun11g00584 723 SMART DUF1785_2 49 101 IPR014811 -
Viun11g00584 723 SMART Piwi_a_2 388 694 IPR003165 GO:0003676
Viun11g00584 723 Gene3D - 283 449 - -
Viun11g00584 723 FunFam Protein argonaute 7 96 223 - -
Viun11g00584 723 CDD Piwi_ago-like 263 688 IPR045246 -
Viun11g00584 723 Gene3D paz domain 95 223 - -
Viun11g00584 723 Pfam Argonaute linker 1 domain 51 100 IPR014811 -
Viun11g00584 723 Pfam PAZ domain 105 235 IPR003100 GO:0005515
Viun11g00584 723 CDD PAZ_argonaute_like 101 218 - -
Viun11g00584 723 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 695 - -
Viun11g00584 723 Gene3D - 455 723 IPR036397 GO:0003676
Viun11g00584 723 Pfam Piwi domain 388 692 IPR003165 GO:0003676
Viun11g00584 723 FunFam Protein argonaute 3 456 723 - -
Viun11g00584 723 Pfam Argonaute linker 2 domain 248 290 IPR032472 -
Viun11g00584 723 ProSiteProfiles Piwi domain profile. 388 694 IPR003165 GO:0003676
Viun11g00584 723 SUPERFAMILY PAZ domain 96 258 IPR036085 GO:0005515
Viun11g00584 723 SUPERFAMILY Ribonuclease H-like 372 692 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00584 Viun-Chr11 6380549 6395596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00584 2 723 Eukaryotic Initiation Factors Gene Family AT5G43810 36.364 5.42e-142 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00584 K11593 - gmx:100778875 1251.11