Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00582 ATGACAGAGGTTGTTCCTGGAACTGAAGAGGCTGCTGAACCTCCAGCATCACCTCAACCATCTCCTGATGTGCCACATAATATGGAAACAGAACAATTTACTCCTACAGAGTACTCTATTATGAGTAGGAATGGAGTTGGGACCGTAGGAGAACAGATATCTTTACTTGTGAATCTCTTTAAAGTTTCTGTTAATGCTCCGGACACACTGTTTTTCCAGTATAGTGTTGCTATTACTTTAGAAGATAAGCGAGCAGTTGAAAGCAAGGTCATTGGGAGAAAAGTGGTTAACAGGCTTTACCAAATATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCCTATGATGGGGGAAAAACTTTGTACACAGCAGGTCCTCTGCCGCTAAATAAGTATGAGTTCAAAGTGCTTTTGGAGGAATCATTTAGAAAACGTGCTGGTGCTGATGGAAGCCTTTGCGAGGAAAGTAAAAGGTCAAAACATTCTTCTCAGCTAAAGGCATTCATGGTGGAGATAAGTTTTTCTGCAAAAATACCCATGCAGTCCATTGCTGTTGCTCTCAAAGGGGTTGACTCAGATGCCAATTCTGAAGATGCGTTGAGGGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTGACCGTGGGTGTCTTTTGGTAAGGCAGTCCTTTTTTCATGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTTGGGTTTTCATTCGAGTTTTCGTTCCACACAGCGAGGATTGACTCTAAATATGGACGTGTCAACAACTATGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAGGGAACCCCGTTATATTGACTGGGAAAAGGCCAAAAAGGTGCTTAAAAATTTGAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAACAACTTTTTAGTATGAAGGTTAAAAATGACAAAGGCAATAATGAAGGACAGACTGTGGAGATTACTGTATATGAATATTTTGTCAAACATTGTGGCATTGATCTGCCTTCATCTATATATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGCACTCTCTCCAGTGCAAAGAGCATCTTTAGTTGAGAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATTCTGTAGGAAAATATTGCTACGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTTCTTGAGGCACCAAAGTTGAAGGTTGGCCAGAATGATGTTTGCATCCCATGTAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCATATTCTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTGAAATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGCGTCTTACCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATCGGTGTTGTTACACAGTGCATTTCCCCTGTCAAGATCACTGATCAATACCTTAATAACATACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATGGAGCATTCTGGCCATCTTCCCTTAATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGAGGTCAATTAGATATTCCATCAGTTGCAGCTGTTGTTGGATCTCGATGTTGGCCACTGATTTCAAGGTATAGAGCGTCTGTGAGAATGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCACTAGAAAATGGGGGTGACGATGGTATTATCAGGGAATTGCTGCTAGATTTCTATGATTCAAGTAACAGCCGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTCAGTGAATCACAATTTCAACAAGTTTTGACTGTGGAGCTTAACCAGATAATAAAGGCCTATCAACGTCTGGGTGAGGATGATGTTCCCAAATTCACCGTGATAGTGGCGCAGAAAAATCATCATACTAGGCTGTTTCAGTCTAATAGTCCGGAAAATGTTCCTCCAGGGACTGTTGTGGACACAACAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTGCTTGATGAGATTGGTTTCTCGGCAGATGAGTTACAAAATTTGATCCATTCGCTGTCCTATGTGAACCAAAGAAGCACGACTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCTGCGGCTCAGATTGGACGATTTTTGGATGTTAATGATTTATCAGAAACTGGGTTAAGTTCTACTCCAGAGTTTCCAAGATTGCATAAGAATATCAGGAGTTCTATGTTCTTCTGTTGA 2673 0.4093 MTEVVPGTEEAAEPPASPQPSPDVPHNMETEQFTPTEYSIMSRNGVGTVGEQISLLVNLFKVSVNAPDTLFFQYSVAITLEDKRAVESKVIGRKVVNRLYQIYSSELGGKRFAYDGGKTLYTAGPLPLNKYEFKVLLEESFRKRAGADGSLCEESKRSKHSSQLKAFMVEISFSAKIPMQSIAVALKGVDSDANSEDALRVLDTVLRQRAADRGCLLVRQSFFHDDPRNFTDVGAGVTAVLGFHSSFRSTQRGLTLNMDVSTTMIIKPGPVIDFLLSNQQVREPRYIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQLFSMKVKNDKGNNEGQTVEITVYEYFVKHCGIDLPSSIYFPCLDVGKPNRPNYLPLELCSLVSLQRYTKALSPVQRASLVEKSRQKPQDRIKILKNSVGKYCYDDDPVLAACGISVDKQLALVEGRVLEAPKLKVGQNDVCIPCNGRWNFNKKTLLQPSHIDYWAVVNFSARCDTSYISRELIRCGMSKGINIERPYSLIEEEPQLRKSNPVARVERMFDLLKSKLNREPKLILCVLPERKNCDIYGPWKKKCLSEIGVVTQCISPVKITDQYLNNILLKINSKLGGINSLLAMEHSGHLPLIKDTPTMILGMDVSHRGQLDIPSVAAVVGSRCWPLISRYRASVRMQASKVEMIDALYKPLENGGDDGIIRELLLDFYDSSNSRKPTQFIVFRDGVSESQFQQVLTVELNQIIKAYQRLGEDDVPKFTVIVAQKNHHTRLFQSNSPENVPPGTVVDTTITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADELQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQIGRFLDVNDLSETGLSSTPEFPRLHKNIRSSMFFC 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00582 890 Gene3D - 450 616 - -
Viun11g00582 890 FunFam Protein argonaute 3 623 890 - -
Viun11g00582 890 FunFam Protein argonaute 7 263 390 - -
Viun11g00582 890 Pfam PAZ domain 272 402 IPR003100 GO:0005515
Viun11g00582 890 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 862 - -
Viun11g00582 890 Pfam Argonaute linker 1 domain 218 267 IPR014811 -
Viun11g00582 890 SMART DUF1785_2 216 268 IPR014811 -
Viun11g00582 890 MobiDBLite consensus disorder prediction 1 29 - -
Viun11g00582 890 CDD Piwi_ago-like 430 855 IPR045246 -
Viun11g00582 890 ProSiteProfiles PAZ domain profile. 293 386 IPR003100 GO:0005515
Viun11g00582 890 Pfam N-terminal domain of argonaute 52 206 IPR032474 -
Viun11g00582 890 CDD PAZ_argonaute_like 268 385 - -
Viun11g00582 890 Gene3D paz domain 262 390 - -
Viun11g00582 890 Pfam Argonaute linker 2 domain 415 457 IPR032472 -
Viun11g00582 890 SUPERFAMILY Ribonuclease H-like 539 859 IPR012337 -
Viun11g00582 890 Gene3D - 622 890 IPR036397 GO:0003676
Viun11g00582 890 SMART Piwi_a_2 555 861 IPR003165 GO:0003676
Viun11g00582 890 SUPERFAMILY PAZ domain 263 425 IPR036085 GO:0005515
Viun11g00582 890 ProSiteProfiles Piwi domain profile. 555 861 IPR003165 GO:0003676
Viun11g00582 890 Pfam Piwi domain 555 859 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00582 Viun-Chr11 6379579 6395596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00582 43 890 Eukaryotic Initiation Factors Gene Family AT5G43810 36.009 1.19e-157 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00582 K11593 - gmx:100778875 1479.92