Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00579 ATGGGATGGATGTCACATGGTTTGGCTTTTGCACTTGTTGCTGTGTTGTTCTGTCTCTTCAGTTGCTTCGTTAGCTTTGCGCAAGCTCAATCTTCGAACGCCACCACTGACCCTTCTGAAGCAAGAGCTTTAAATTCGATCTTCAGCAGATGGGGTATCTCTGCAGACACAAGTGTGTGGAATATAAGCGGTGAACTGTGCAGTGGAAGTGCCATCGATAGTACCTCCACCCCTGAAAGTTACAATCCATTTATCAGATGTGACTGTTCCTTTGACAGTGGAACTATTTGCCGCATCACAGCACTGAGGGTCTATGCACTGGACAACGTGATTGGTGACATTCCAGAAGAGCTATGGACTCTCACATATCTCACCAATTTAAATCTTGGGCAAAATTACTTGACGGGTTCTCTACCTCCAGCTATTGGAAATCTAACTCGTATGCAATACTTGAGCCTTGGAATCAATAATTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACGGACTTAATAGTACTGAGTATTTCGTCAAACAATTTCTCAGGATCTCTCCCATCCGAACTTGGGAAACTCACAAGTTTACAACAACTCTACATTGATAGTGCCGGAATTAGTGGTCCAATTCCATCCTCATTTGCAGACCTTAGGAGTTTGGTGACAGTATGGGCTTCAGACGTGGAATTCACAGGCAATATACCAAGCTTCATAGGGAATTGGACTGGGCTTCAAGTCTTGAGGTTTCAAGGCAATTCTTTTAATGGCTCAATACCCTCATCATTTTCCAACTTGACTTCTTTAACAGAATTGCGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTGTACAGGATATGAAATCTTTGACTATCTTAGAATTGAGGAACAACAATATTTCTGGTTCGATTCCATCCTTCATTGGAGAGTTACACAATTTGACCCAACTGGATTTAAGTTTCAATAACATCGAAGGACAAATTCCGGGTTCAATTTTCAATTTGAGCTCGCTCACTACCTTGTTTCTTGGAAATAATAAACTAAATGGCACCCTTCCGACGCAGATACGTTCATCACTTCAGAATATAGACCTGTCATACAATGATCTATCAGGCAGCCTCCCCTCTTGGGTAAACGAAGCAAATTTACAACTGAATTTAGTTGCTAACAACTTGTCGATAGATGATGGTTCAGATACCAGTGGCTTGCCATTTGGGCTCAACTGTCTCCAGAAAAATTTTCCTTGCAATCGAGGTGCTGGAAGATATTCTGACTTTGCAATCAAGTGTGGAGGAACCCAAATTATGTCCACAGAAGGAATCACATATGAAAGGGAGAATGAGACACTTGGTTCTGCTACATACTTTGTTACTGATACAAGTAAATGGGCTGTTAGTAATGTTGGATTATTTACGGGCAGTAATAATCCAGTATACACAAGATTTGTGTCTAATCAATTCACTAACACTTTGAATCCAGAGCTCTTCCAAACAGCACGAATTTCTCCTTCATCATTAAGATATTATGGCTTAGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCTGAAACAGCTATTCAGGATTCTACTACATCATGGCAAAGTCTTGGGAGACGAGTCTTTGATATATATATTCAGGGGAATCTTGTTTTGAAAGATTTCGACATAAAAAAGGAAGCTGGGGGCATCTCGTTCAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACGGAAAACTATATTGACATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGCATACCAGCCCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATTCCAGATTTTATACCTACTGTCAGTAATGAACCTCCAAGCAATAAAAGTAATAGAACAGGCCTTATTGTTGGAATTGTTGTTGGAGTTGGAGTTGTAAGCTTCCTATCAGTTTTTTTGATTTTCTGGATCATTAGGAGAAGAAAACAACGTCAGCATGAGGATGAAGAGCTTTCAGGAATTGATACAAAGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACAAATGACTTTAATCTCGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAGTGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTGGCATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTACAACATCGTAATCTGGTTAAACTGTATGGATGTTGCATTGAGGGAAATAAGAAACTTCTTGTGTACGAATATCTAGAGAATAAGAGTCTTGATCAAGGATTATTTGGAAATTCTTTAACCCTCGATTGGTCCACACGCTATGATATCTGCGTGGGTATTGCCAGAGGTTTAGCTTATTTGCATGAAGAGTCCCGTCTCCGTATTGTACACCGTGACGTGAAGGCCAGTAATATTTTGCTTGACTATGAGCTTGTACCCAAAATATCTGATTTTGGGTTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACCCGTGTAGCTGGGACAATGTGA 2577 0.4067 MGWMSHGLAFALVAVLFCLFSCFVSFAQAQSSNATTDPSEARALNSIFSRWGISADTSVWNISGELCSGSAIDSTSTPESYNPFIRCDCSFDSGTICRITALRVYALDNVIGDIPEELWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYLSLGINNLSGELPKELGNLTDLIVLSISSNNFSGSLPSELGKLTSLQQLYIDSAGISGPIPSSFADLRSLVTVWASDVEFTGNIPSFIGNWTGLQVLRFQGNSFNGSIPSSFSNLTSLTELRISGLSNGSSSLEFVQDMKSLTILELRNNNISGSIPSFIGELHNLTQLDLSFNNIEGQIPGSIFNLSSLTTLFLGNNKLNGTLPTQIRSSLQNIDLSYNDLSGSLPSWVNEANLQLNLVANNLSIDDGSDTSGLPFGLNCLQKNFPCNRGAGRYSDFAIKCGGTQIMSTEGITYERENETLGSATYFVTDTSKWAVSNVGLFTGSNNPVYTRFVSNQFTNTLNPELFQTARISPSSLRYYGLGLENGFYNITLQFAETAIQDSTTSWQSLGRRVFDIYIQGNLVLKDFDIKKEAGGISFRAVQRQFRFEVTENYIDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPTVSNEPPSNKSNRTGLIVGIVVGVGVVSFLSVFLIFWIIRRRKQRQHEDEELSGIDTKPYTFSYSELKNATNDFNLENKLGEGGFGPVYKGTLSDGRVIAVKQLSVASHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFGNSLTLDWSTRYDICVGIARGLAYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTM 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00579 858 ProSiteProfiles Leucine-rich repeat profile. 315 337 IPR001611 GO:0005515
Viun11g00579 858 Pfam Protein tyrosine and serine/threonine kinase 696 849 IPR001245 GO:0004672|GO:0006468
Viun11g00579 858 Pfam Malectin domain 427 613 IPR021720 -
Viun11g00579 858 SUPERFAMILY L domain-like 96 398 - -
Viun11g00579 858 FunFam Leucine-rich repeat receptor-like protein kinase 664 770 - -
Viun11g00579 858 FunFam Os05g0263100 protein 41 278 - -
Viun11g00579 858 SUPERFAMILY Protein kinase-like (PK-like) 674 857 IPR011009 -
Viun11g00579 858 Gene3D Ribonuclease Inhibitor 37 277 IPR032675 -
Viun11g00579 858 FunFam Os07g0541700 protein 771 857 - -
Viun11g00579 858 Gene3D Ribonuclease Inhibitor 278 400 IPR032675 -
Viun11g00579 858 Gene3D Phosphorylase Kinase; domain 1 658 770 - -
Viun11g00579 858 FunFam Leucine-rich repeat receptor-like protein kinase 425 617 - -
Viun11g00579 858 ProSiteProfiles Protein kinase domain profile. 695 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00579 858 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Viun11g00579 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Viun11g00579 858 Gene3D Transferase(Phosphotransferase) domain 1 771 858 - -
Viun11g00579 858 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 858 - -
Viun11g00579 858 FunFam Putative LRR receptor-like serine/threonine-protein kinase 279 402 - -
Viun11g00579 858 SMART serkin_6 695 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00579 858 Gene3D - 427 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00579 Viun-Chr11 6348772 6359578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00579 148 858 Receptor kinase-like Gene Family AT1G56120 63.624 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00579 Malectin 7.3e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00579 - - gmx:100798233 1334.7