Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00578 ATGGGATGGATGTCACATGGTTTGGCTTTTGCACTTGTTGCTGTGTTGTTCTGTCTCTTCAGTTGCTTCGTTAGCTTTGCGCAAGCTCAATCTTCGAACGCCACCACTGACCCTTCTGAAGCAAGAGCTTTAAATTCGATCTTCAGCAGATGGGGTATCTCTGCAGACACAAGTGTGTGGAATATAAGCGGTGAACTGTGCAGTGGAAGTGCCATCGATAGTACCTCCACCCCTGAAAGTTACAATCCATTTATCAGATGTGACTGTTCCTTTGACAGTGGAACTATTTGCCGCATCACAGCACTGAGGGTCTATGCACTGGACAACGTGATTGGTGACATTCCAGAAGAGCTATGGACTCTCACATATCTCACCAATTTAAATCTTGGGCAAAATTACTTGACGGGTTCTCTACCTCCAGCTATTGGAAATCTAACTCGTATGCAATACTTGAGCCTTGGAATCAATAATTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACGGACTTAATAGTACTGAGTATTTCGTCAAACAATTTCTCAGGATCTCTCCCATCCGAACTTGGGAAACTCACAAGTTTACAACAACTCTACATTGATAGTGCCGGAATTAGTGGTCCAATTCCATCCTCATTTGCAGACCTTAGGAGTTTGGTGACAGTATGGGCTTCAGACGTGGAATTCACAGGCAATATACCAAGCTTCATAGGGAATTGGACTGGGCTTCAAGTCTTGAGGTTTCAAGGCAATTCTTTTAATGGCTCAATACCCTCATCATTTTCCAACTTGACTTCTTTAACAGAATTGCGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTGTACAGGATATGAAATCTTTGACTATCTTAGAATTGAGGAACAACAATATTTCTGGTTCGATTCCATCCTTCATTGGAGAGTTACACAATTTGACCCAACTGGATTTAAGTTTCAATAACATCGAAGGACAAATTCCGGGTTCAATTTTCAATTTGAGCTCGCTCACTACCTTGTTTCTTGGAAATAATAAACTAAATGGCACCCTTCCGACGCAGATACGTTCATCACTTCAGAATATAGACCTGTCATACAATGATCTATCAGGCAGCCTCCCCTCTTGGGTAAACGAAGCAAATTTACAACTGAATTTAGTTGCTAACAACTTGTCGATAGATGATGGTTCAGATACCAGTGGCTTGCCATTTGGGCTCAACTGTCTCCAGAAAAATTTTCCTTGCAATCGAGGTGCTGGAAGATATTCTGACTTTGCAATCAAGTGTGGAGGAACCCAAATTATGTCCACAGAAGGAATCACATATGAAAGGGAGAATGAGACACTTGGTTCTGCTACATACTTTGTTACTGATACAAGTAAATGGGCTGTTAGTAATGTTGGATTATTTACGGGCAGTAATAATCCAGTATACACAAGATTTGTGTCTAATCAATTCACTAACACTTTGAATCCAGAGCTCTTCCAAACAGCACGAATTTCTCCTTCATCATTAAGATATTATGGCTTAGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCTGAAACAGCTATTCAGGATTCTACTACATCATGGCAAAGTCTTGGGAGACGAGTCTTTGATATATATATTCAGGGGAATCTTGTTTTGAAAGATTTCGACATAAAAAAGGAAGCTGGGGGCATCTCGTTCAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACGGAAAACTATATTGACATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGCATACCAGCCCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATTCCAGATTTTATACCTACTGTCAGTAATGAACCTCCAAGCAATAAAAGTAATAGAACAGGCCTTATTGTTGGAATTGTTGTTGGAGTTGGAGTTGTAAGCTTCCTATCAGTTTTTTTGATTTTCTGGATCATTAGGAGAAGAAAACAACGTCAGCATGAGGATGAAGAGCTTTCAGGAATTGATACAAAGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACAAATGACTTTAATCTCGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAGTGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTGGCATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTACAACATCGTAATCTGGTTAAACTGTATGGATGTTGCATTGAGGGAAATAAGAAACTTCTTGTGTACGAATATCTAGAGAATAAGAGTCTTGATCAAGGATTATTTGGAAATTCTTTAACCCTCGATTGGTCCACACGCTATGATATCTGCGTGGGTATTGCCAGAGGTTTAGCTTATTTGCATGAAGAGTCCCGTCTCCGTATTGTACACCGTGACGTGAAGGCCAGTAATATTTTGCTTGACTATGAGCTTGTACCCAAAATATCTGATTTTGGGTTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACCCGTGTAGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATATATTTTCATTTGGTGTTGTTGCTCTTGAGTTAGTTAGTGGGAGACCAAATTCTGATTCAAGTTTGGAAGGAGAAAAGGTGTATCTTCTTGAATGGGCTTGGCAACTTCATGAAAGCAACCTCATAATGGATCTAGTGGACCCTAGACTCTCAGAATTCAACGAGGAAGAAGTAAAACGTATTGTGGGAATAGCACTTCTGTGCACTCAAACATCACCATCATTAAGACCATCAATGTCACGAGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTGACTTCAAAGCCTGGATACCTTACTGACTGGAAATTTGACGATGTGAGCAGCTTCATGACTGACAATGCAATCAAAGGATTGAATACAAGTTACCAGTCTTCATCAGGAAGTACCAGCATGGTGGGTGGTGCAGACTATTCACCAATAAGTGTTTCTAAACCGATCCTTGAGGATACTCTTGATGAGGGTAGGTAA 3108 0.4096 MGWMSHGLAFALVAVLFCLFSCFVSFAQAQSSNATTDPSEARALNSIFSRWGISADTSVWNISGELCSGSAIDSTSTPESYNPFIRCDCSFDSGTICRITALRVYALDNVIGDIPEELWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYLSLGINNLSGELPKELGNLTDLIVLSISSNNFSGSLPSELGKLTSLQQLYIDSAGISGPIPSSFADLRSLVTVWASDVEFTGNIPSFIGNWTGLQVLRFQGNSFNGSIPSSFSNLTSLTELRISGLSNGSSSLEFVQDMKSLTILELRNNNISGSIPSFIGELHNLTQLDLSFNNIEGQIPGSIFNLSSLTTLFLGNNKLNGTLPTQIRSSLQNIDLSYNDLSGSLPSWVNEANLQLNLVANNLSIDDGSDTSGLPFGLNCLQKNFPCNRGAGRYSDFAIKCGGTQIMSTEGITYERENETLGSATYFVTDTSKWAVSNVGLFTGSNNPVYTRFVSNQFTNTLNPELFQTARISPSSLRYYGLGLENGFYNITLQFAETAIQDSTTSWQSLGRRVFDIYIQGNLVLKDFDIKKEAGGISFRAVQRQFRFEVTENYIDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPTVSNEPPSNKSNRTGLIVGIVVGVGVVSFLSVFLIFWIIRRRKQRQHEDEELSGIDTKPYTFSYSELKNATNDFNLENKLGEGGFGPVYKGTLSDGRVIAVKQLSVASHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFGNSLTLDWSTRYDICVGIARGLAYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALELVSGRPNSDSSLEGEKVYLLEWAWQLHESNLIMDLVDPRLSEFNEEEVKRIVGIALLCTQTSPSLRPSMSRVVAMLSGDIEVSTVTSKPGYLTDWKFDDVSSFMTDNAIKGLNTSYQSSSGSTSMVGGADYSPISVSKPILEDTLDEGR 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00578 1035 ProSiteProfiles Leucine-rich repeat profile. 315 337 IPR001611 GO:0005515
Viun11g00578 1035 Pfam Malectin domain 427 613 IPR021720 -
Viun11g00578 1035 Gene3D Ribonuclease Inhibitor 277 399 IPR032675 -
Viun11g00578 1035 SMART serkin_6 695 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00578 1035 Gene3D Transferase(Phosphotransferase) domain 1 771 974 - -
Viun11g00578 1035 Gene3D - 427 617 - -
Viun11g00578 1035 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 996 - -
Viun11g00578 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Viun11g00578 1035 SUPERFAMILY L domain-like 96 398 - -
Viun11g00578 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase 771 974 - -
Viun11g00578 1035 ProSiteProfiles Protein kinase domain profile. 695 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00578 1035 Pfam Protein tyrosine and serine/threonine kinase 696 962 IPR001245 GO:0004672|GO:0006468
Viun11g00578 1035 CDD STKc_IRAK 701 962 - -
Viun11g00578 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase 279 402 - -
Viun11g00578 1035 FunFam Os05g0263100 protein 41 278 - -
Viun11g00578 1035 Gene3D Phosphorylase Kinase; domain 1 658 770 - -
Viun11g00578 1035 SUPERFAMILY Protein kinase-like (PK-like) 677 982 IPR011009 -
Viun11g00578 1035 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Viun11g00578 1035 FunFam Leucine-rich repeat receptor-like protein kinase 664 770 - -
Viun11g00578 1035 FunFam Leucine-rich repeat receptor-like protein kinase 425 617 - -
Viun11g00578 1035 Gene3D Ribonuclease Inhibitor 37 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00578 Viun-Chr11 6347620 6359573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00578 148 1035 Receptor kinase-like Gene Family AT1G56120 63.075 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00578 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00578 - - gmx:100798233 1629.77